Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Variable modifications first search	Use variable modifications first search	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
SA_persister_WT_log_rep1_18May16_Samwise_16-03-32	log_rep1	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		22834	79333	107203	51463	0	55740	38334	35127	0	3207	35.76	68.26	NaN	5.75	18688	1188163	67760	5.7	4186	6.18	129604	42731	41554	32.97	45.33	7400	17.32	+	0.8649	1.2133	0.6216	0.91129	
SA_persister_WT_log_rep2_18May16_Samwise_16-03-32	log_rep2	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		22514	80360	108711	52009	0	56702	39239	35770	0	3469	36.09	68.78	NaN	6.12	19169	1200656	68585	5.71	4266	6.22	132876	43309	42039	32.59	44.76	7382	17.04	+	0.88537	1.2397	0.63852	0.93718	
SA_persister_WT_log_rep3_18May16_Samwise_16-03-32	log_rep3	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		22526	79381	107458	51304	0	56154	37919	34782	0	3137	35.29	67.8	NaN	5.59	18426	1189931	67644	5.68	4127	6.1	132519	42836	41683	32.32	45.1	7243	16.91	+	0.8673	1.2148	0.62323	0.91163	
SA_persister_WT_log_rep4_18May16_Samwise_16-03-32	log_rep4	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		22522	80465	108194	52736	0	55458	39512	36123	0	3389	36.52	68.5	NaN	6.11	19799	1210148	69278	5.72	4104	5.92	132504	44135	42870	33.31	44.75	7389	16.74	+	0.8949	1.2469	0.64573	0.94171	
SA_persister_WT_stat_rep1_18May16_Samwise_16-03-32	stat_rep1	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		20832	74642	101062	48222	0	52840	27239	24723	0	2516	26.95	51.27	NaN	4.76	14392	1105083	63589	5.75	3760	5.91	128512	40645	39332	31.63	45.02	6230	15.33	+	0.95989	1.3116	0.67291	0.95935	
SA_persister_WT_stat_rep2_18May16_Samwise_16-03-32	stat_rep2	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		21231	77825	105995	49655	0	56340	31578	28867	0	2711	29.79	58.14	NaN	4.81	16445	1160947	66569	5.73	3616	5.43	133701	42308	40911	31.64	44.22	6203	14.66	+	0.92392	1.2788	0.65257	0.94205	
SA_persister_WT_stat_rep3_18May16_Samwise_16-03-32	stat_rep3	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		21425	75071	100523	49619	0	50904	30126	27531	0	2595	29.97	55.48	NaN	5.1	15746	1062095	63579	5.99	4379	6.89	121442	40762	39445	33.56	46.06	7045	17.28	+	0.9291	1.2761	0.65218	0.93555	
SA_persister_WT_stat_rep4_18May16_Samwise_16-03-32	stat_rep4	Trypsin	Specific			False	Oxidation (M)		False	1	2		Standard		21497	81054	112764	49344	0	63420	29985	27220	0	2765	26.59	55.16	NaN	4.36	15226	1200952	69178	5.76	3767	5.45	123922	41926	40573	33.83	44.22	6240	14.88	+	0.94239	1.29	0.66846	0.95605	
log_rep1																													18688																		
log_rep2																													19169																		
log_rep3																													18426																		
log_rep4																													19799																		
stat_rep1																													14392																		
stat_rep2																													16445																		
stat_rep3																													15746																		
stat_rep4																													15226																		
Total															175381	628131	851910	404352	0	447558	273932	250143	0	23789	32.16	61.86	NaN	5.32	28381	9317975					1035080	338652	328407	32.72	44.92	55132	16.28		0.9043	1.2552	0.64492	0.93551