Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
S14942	T1_parental	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18715	119855	0	159755	79955	0	79800	41880	39592	0	2288	26.22	49.52	NaN	2.87	26099	1649608	92468	5.61	10267	11.1	189417	62038	60806	32.75	35.56	13532	21.81	+	0.72236	1.0378	0.55999	0.85119	
S14943	T1_IM/ARQ	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18900	119761	0	159732	79790	0	79942	43569	41135	0	2434	27.28	51.55	NaN	3.04	26970	1610622	92425	5.74	10249	11.09	185374	61818	60634	33.35	36.12	13640	22.06	+	0.70433	1.0129	0.54329	0.82289	
S14944	T1_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18898	119250	0	159101	79399	0	79702	44496	42029	0	2467	27.97	52.93	NaN	3.1	27733	1621892	92036	5.67	10083	10.96	187163	61742	60668	32.99	35.68	13380	21.67	+	0.71102	1.0265	0.55136	0.8386	
S14945	T1_20h_IM-ARQ	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18375	121783	0	163715	79851	0	83864	28398	26812	0	1586	17.35	33.58	NaN	1.89	18290	1643343	93138	5.67	9974	10.71	191796	62557	60776	32.62	36.1	13034	20.84	+	0.75416	1.0673	0.58773	0.87883	
S14946	T1_11.14.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18392	120135	0	159323	80947	0	78376	44349	42102	0	2247	27.84	52.01	NaN	2.87	27976	1675784	92871	5.54	10245	11.03	193867	62878	61731	32.43	35	13565	21.57	+	0.7282	1.0455	0.56188	0.85349	
S14947	T1_20h_IM-ARQ_11.14.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18452	119590	0	159263	79917	0	79346	37898	36170	0	1728	23.8	45.26	NaN	2.18	24294	1632176	92088	5.64	10093	10.96	189559	62290	61007	32.86	35.72	13320	21.38	+	0.72496	1.037	0.56008	0.84658	
S14948	829_parental_11.08.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18228	119648	0	157890	81406	0	76484	45483	43365	0	2118	28.81	53.27	NaN	2.77	28800	1704919	93017	5.46	10158	10.92	202143	63543	62433	31.43	33.91	13551	21.33	+	0.73066	1.0457	0.56285	0.854	
S14949	829_IM-ARQ_11.08.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18181	121233	0	160661	81805	0	78856	45310	43207	0	2103	28.2	52.82	NaN	2.67	28851	1676227	93555	5.58	10310	11.02	198239	63662	62509	32.11	34.54	13606	21.37	+	0.73164	1.045	0.56398	0.85143	
S14950	829_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18299	120810	0	160149	81471	0	78678	46382	44041	0	2341	28.96	54.06	NaN	2.98	29006	1699254	93213	5.49	10284	11.03	199936	63406	62259	31.71	34.21	13629	21.49	+	0.72178	1.0373	0.55982	0.85246	
S14951	829_IM-ARQ	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18234	121425	0	161303	81547	0	79756	46325	44021	0	2304	28.72	53.98	NaN	2.89	29253	1728573	93976	5.44	10434	11.1	203508	63629	62508	31.27	33.72	13562	21.31	+	0.72861	1.0461	0.56211	0.85199	
S14952	829_P35_10.24.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18248	121325	0	161149	81501	0	79648	46395	44121	0	2274	28.79	54.14	NaN	2.86	29288	1726070	93461	5.41	10264	10.98	202190	63504	62361	31.41	33.81	13400	21.1	+	0.73399	1.0528	0.56641	0.86018	
S14953	829_P35_IM-ARQ_10.24.19	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)			False	False	1	2		Standard		18179	120587	0	160110	81064	0	79046	45548	43294	0	2254	28.45	53.41	NaN	2.85	29126	1725915	92999	5.39	10265	11.04	202348	63349	62218	31.31	33.65	13395	21.14	+	0.72609	1.0441	0.55658	0.84392	
829_control																																29006																		
829_IM-ARQ																																29253																		
829_IM-ARQ_11.08.19																																28851																		
829_P35_10.24.19																																29288																		
829_P35_IM-ARQ_10.24.19																																29126																		
829_parental_11.08.19																																28800																		
T1_11.14.19																																27976																		
T1_20h_IM-ARQ																																18290																		
T1_20h_IM-ARQ_11.14.19																																24294																		
T1_control																																27733																		
T1_IM/ARQ																																26970																		
T1_parental																																26099																		
Total																	221101	1445402	0	1922151	968653	0	953498	516033	489889	0	26144	26.85	50.57	NaN	2.74	49893	20094383					2345540	754416	739910	32.16	34.8	161614	21.42		0.72577	1.041	0.56061	0.84983