Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
20210223_TTP_P_SILS5622_RA1_1_9559	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		13365	51270	0	33289	33289	0	0	2212	2212	0	0	6.6	6.6	0	0	1590	1818172	57488	3.2	49924	87	121244	33317	31051	27	35	30827	93	+					
20210223_TTP_P_SILS5623_RA2_1_9560	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12052	52642	0	41238	41238	0	0	5571	5571	0	0	14	14	0	0	3469	2261316	76058	3.4	64020	84	154873	41254	38741	27	33	37453	91	+					
20210223_TTP_P_SILS5624_RA3_1_9561	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		11831	52902	0	49841	49841	0	0	7034	7034	0	0	14	14	0	0	4180	3247062	99661	3.1	81078	81	210234	49853	46956	24	31	44149	89	+					
20210223_TTP_P_SILS5625_RA4_1_9562	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12937	51249	0	46931	46931	0	0	6375	6375	0	0	14	14	0	0	3741	2822154	92032	3.3	77132	84	178387	46931	44648	26	32	42380	90	+					
20210223_TTP_P_SILS5626_RA5_1_9563	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		13013	51215	0	45430	45430	0	0	8299	8299	0	0	18	18	0	0	4441	2336273	83636	3.6	72270	86	150250	45432	43663	30	34	41990	92	+					
20210223_TTP_P_SILS5627_RA6_1_9564	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12877	51052	0	61852	61852	0	0	12461	12461	0	0	20	20	0	0	6544	3429162	110028	3.2	91126	83	240945	61857	59757	26	29	55334	89	+					
20210223_TTP_P_SILS5628_RA7_1_9565	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12230	52008	0	54764	54764	0	0	12243	12243	0	0	22	22	0	0	6731	3008396	97147	3.2	81517	84	208960	54767	52991	26	30	49224	90	+					
20210223_TTP_P_SILS5629_RA8_1_9566	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12374	52133	0	41348	41348	0	0	10023	10023	0	0	24	24	0	0	5358	2120957	74183	3.5	64157	86	140498	41351	40077	29	32	37979	92	+					
20210223_TTP_P_SILS5630_RB1_1_9569	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12281	52805	0	40565	40565	0	0	9600	9600	0	0	24	24	0	0	5114	2183990	74767	3.4	64293	86	138047	40569	38791	29	31	37093	91	+					
20210223_TTP_P_SILS5631_RB2_1_9570	WT1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		15160	48579	0	13395	13395	0	0	3855	3855	0	0	29	29	0	0	2198	893028	30956	3.5	27386	88	41198	13398	12694	33	35	12465	93	+					
20210223_TTP_P_SILS5632_RB3_1_9571	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12130	52782	0	42225	42225	0	0	3010	3010	0	0	7.1	7.1	0	0	2032	2430456	74457	3.1	62829	84	164924	42241	39450	26	33	38407	91	+					
20210223_TTP_P_SILS5633_RB4_1_9572	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		11760	52978	0	53481	53481	0	0	6797	6797	0	0	13	13	0	0	3948	3296591	98999	3	80423	81	231481	53502	50469	23	30	47237	88	+					
20210223_TTP_P_SILS5634_RB5_1_9573	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12557	51877	0	49731	49731	0	0	7283	7283	0	0	15	15	0	0	4180	3144294	99533	3.2	81285	82	205914	49738	46915	24	31	44194	89	+					
20210223_TTP_P_SILS5635_RB6_1_9574	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12622	51862	0	49722	49722	0	0	7941	7941	0	0	16	16	0	0	4384	2908141	97623	3.4	81550	84	183236	49724	47463	27	32	44935	90	+					
20210223_TTP_P_SILS5636_RB7_1_9575	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12680	51699	0	49178	49178	0	0	9144	9144	0	0	19	19	0	0	4726	2646319	90226	3.4	77388	86	169037	49181	47294	29	32	45136	92	+					
20210223_TTP_P_SILS5637_RB8_1_9576	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		13584	50234	0	61124	61124	0	0	12714	12714	0	0	21	21	0	0	6750	3265859	108651	3.3	90027	83	233744	61129	59019	26	29	54443	89	+					
20210223_TTP_P_SILS5638_RC1_1_9580	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12087	53055	0	55100	55100	0	0	12236	12236	0	0	22	22	0	0	6621	2884078	96864	3.4	80951	84	208480	55105	53228	26	30	49377	90	+					
20210223_TTP_P_SILS5639_RC2_1_9581	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12486	52086	0	42473	42473	0	0	9610	9610	0	0	23	23	0	0	4964	2086994	75218	3.6	64994	86	143269	42474	41137	30	32	38946	92	+					
20210223_TTP_P_SILS5640_RC3_1_9582	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12286	51988	0	49383	49383	0	0	10640	10640	0	0	22	22	0	0	5589	2825793	91577	3.2	77191	84	184276	49383	46185	27	29	44361	90	+					
20210223_TTP_P_SILS5641_RC4_1_9583	WT2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14255	49586	0	24780	24780	0	0	5663	5663	0	0	23	23	0	0	3229	1429994	49619	3.5	43052	87	80527	24782	22841	31	32	22776	92	+					
20210223_TTP_P_SILS5642_RC5_1_9584	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12062	52774	0	42993	42993	0	0	3323	3323	0	0	7.7	7.7	0	0	2197	2497374	76204	3.1	64484	85	170203	43018	40136	25	33	39195	91	+					
20210223_TTP_P_SILS5643_RC6_1_9585	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		11493	53422	0	54251	54251	0	0	6465	6465	0	0	12	12	0	0	3675	3375956	99946	3	81323	81	239836	54268	51136	23	31	48007	88	+					
20210223_TTP_P_SILS5644_RC7_1_9586	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12190	52409	0	52174	52174	0	0	8679	8679	0	0	17	17	0	0	5125	3255555	103913	3.2	84336	81	214854	52182	49438	24	31	46157	88	+					
20210223_TTP_P_SILS5645_RC8_1_9587	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12282	52288	0	48536	48536	0	0	7727	7727	0	0	16	16	0	0	4081	2721088	93893	3.5	79359	85	172270	48542	46269	28	33	44096	91	+					
20210223_TTP_P_SILS5646_RD1_1_9590	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		13118	51745	0	50930	50930	0	0	9114	9114	0	0	18	18	0	0	4807	2704170	92682	3.4	79074	85	178108	50938	48966	29	32	46641	92	+					
20210223_TTP_P_SILS5647_RD2_1_9591	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12725	52126	0	62027	62027	0	0	12797	12797	0	0	21	21	0	0	6549	3417536	111597	3.3	92639	83	238243	62028	59799	26	29	55544	90	+					
20210223_TTP_P_SILS5648_RD3_1_9592	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12095	53067	0	57538	57538	0	0	12614	12614	0	0	22	22	0	0	6632	3021089	101324	3.4	84382	83	221762	57540	55569	26	29	51312	89	+					
20210223_TTP_P_SILS5649_RD4_1_9593	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12538	52667	0	34486	34486	0	0	8011	8011	0	0	23	23	0	0	4110	1685341	62669	3.7	54883	88	110568	34492	33296	31	34	31899	92	+					
20210223_TTP_P_SILS5650_RD5_1_9594	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		12331	52687	0	49844	49844	0	0	10890	10890	0	0	22	22	0	0	5658	2724321	92223	3.4	77632	84	182932	49844	46024	27	29	44695	90	+					
20210223_TTP_P_SILS5651_RD6_1_9595	WT3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		13781	51083	0	17724	17724	0	0	4149	4149	0	0	23	23	0	0	2428	1150124	39495	3.4	34730	88	55298	17726	16103	32	34	16371	92	+					
20210223_TTP_P_SILS5652_RD7_1_9596	M-CotER1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14769	49166	0	75425	75425	0	0	22311	22311	0	0	30	30	0	0	14844	4252516	121348	2.9	99659	82	320911	75427	72609	24	29	66904	89	+					
20210223_TTP_P_SILS5653_RD8_1_9597	M-CotER2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14388	49277	0	73206	73206	0	0	23413	23413	0	0	32	32	0	0	15881	3897289	116812	3	96356	82	300197	73206	70483	24	30	65137	89	+					
20210223_TTP_P_SILS5654_RE1_1_9601	M-CotER3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14336	49922	0	67455	67455	0	0	21305	21305	0	0	32	32	0	0	14878	3398260	105873	3.1	88386	83	264982	67455	65142	25	31	60384	90	+					
20210223_TTP_P_SILS5655_RE2_1_9602	M-001R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14279	49780	0	71278	71278	0	0	25403	25403	0	0	36	36	0	0	16808	3896711	115719	3	95367	82	287033	71280	68570	25	30	63393	89	+					
20210223_TTP_P_SILS5656_RE3_1_9603	M-001R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14571	49260	0	71720	71720	0	0	26258	26258	0	0	37	37	0	0	17200	3927775	116366	3	95900	82	291986	71723	68993	25	29	63871	89	+					
20210223_TTP_P_SILS5657_RE4_1_9604	M-001R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14471	49696	0	69570	69570	0	0	25125	25125	0	0	36	36	0	0	16882	3649518	112032	3.1	92573	83	279551	69572	66983	25	30	62048	89	+					
20210223_TTP_P_SILS5658_RE5_1_9605	M-003R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14750	49379	0	64693	64693	0	0	24766	24766	0	0	38	38	0	0	16785	3135960	103398	3.3	86221	83	245046	64694	62456	26	31	58024	90	+					
20210223_TTP_P_SILS5659_RE6_1_9606	M-003R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14157	50047	0	68914	68914	0	0	25157	25157	0	0	37	37	0	0	16966	3552660	111475	3.1	92557	83	270994	68916	66308	25	30	61651	89	+					
20210223_TTP_P_SILS5660_RE7_1_9607	M-003R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14572	49304	0	71047	71047	0	0	26212	26212	0	0	37	37	0	0	17393	3777057	115573	3.1	95313	82	285053	71048	68228	25	29	63354	89	+					
20210223_TTP_P_SILS5661_RE8_1_9608	M-005R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14624	49291	0	72094	72094	0	0	25390	25390	0	0	35	35	0	0	16923	3965217	118006	3	97231	82	296184	72096	69240	24	29	64082	89	+					
20210223_TTP_P_SILS5662_GA1_1_9612	M-005R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14492	49261	0	67291	67291	0	0	24094	24094	0	0	36	36	0	0	15245	3833812	111721	2.9	92801	83	271407	67293	64567	25	29	60333	90	+					
20210223_TTP_P_SILS5663_GA2_1_9613	M-005R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14607	49342	0	70176	70176	0	0	25232	25232	0	0	36	36	0	0	16924	3823643	113625	3	93662	82	290087	70179	67571	24	29	62396	89	+					
20210223_TTP_P_SILS5664_GA3_1_9614	M-006R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14434	49448	0	72237	72237	0	0	25588	25588	0	0	35	35	0	0	16910	4081940	117963	2.9	97086	82	302460	72238	69467	24	28	64336	89	+					
20210223_TTP_P_SILS5665_GA4_1_9615	M-006R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14527	49337	0	73572	73572	0	0	25578	25578	0	0	35	35	0	0	17080	4224336	120091	2.8	98717	82	314136	73574	70722	23	28	65470	89	+					
20210223_TTP_P_SILS5666_GA5_1_9616	M-006R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14684	49184	0	73217	73217	0	0	24736	24736	0	0	34	34	0	0	16747	4073087	118236	2.9	96987	82	309968	73218	70446	24	29	64879	89	+					
20210223_TTP_P_SILS5667_GA6_1_9617	M-007R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14054	50110	0	71962	71962	0	0	27798	27798	0	0	39	39	0	0	18506	3899946	116461	3	96109	83	296009	71964	69057	24	29	64037	89	+					
20210223_TTP_P_SILS5668_GA7_1_9618	M-007R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14551	49585	0	64650	64650	0	0	26762	26762	0	0	41	41	0	0	18236	3172971	102915	3.2	85943	84	250048	64654	62389	26	31	58018	90	+					
20210223_TTP_P_SILS5669_GA8_1_9619	M-007R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14199	49861	0	72162	72162	0	0	28223	28223	0	0	39	39	0	0	18728	3988306	117856	3	97072	82	299487	72165	69276	24	29	64227	89	+					
20210223_TTP_P_SILS5670_GB1_1_9623	M-008R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14617	49230	0	73115	73115	0	0	27981	27981	0	0	38	38	0	0	18680	3943287	118115	3	97124	82	303244	73117	70259	24	29	64947	89	+					
20210223_TTP_P_SILS5671_GB2_1_9624	M-008R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14520	49416	0	71579	71579	0	0	26890	26890	0	0	38	38	0	0	17737	3891360	116669	3	96174	82	293365	71584	68806	24	29	63663	89	+					
20210223_TTP_P_SILS5672_GB3_1_9625	M-008R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14446	49607	0	74545	74545	0	0	27692	27692	0	0	37	37	0	0	18485	4138774	120707	2.9	99069	82	316650	74548	71674	24	29	66098	89	+					
20210223_TTP_P_SILS5673_GB4_1_9626	M-009R1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14527	49270	0	74207	74207	0	0	24160	24160	0	0	33	33	0	0	16153	4035099	119637	3	98289	82	309468	74209	71474	24	29	65927	89	+					
20210223_TTP_P_SILS5674_GB5_1_9627	M-009R2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14525	49335	0	73883	73883	0	0	294	294	0	0	0.4	0.4	0	0	274	4047470	119364	2.9	98136	82	305387	73884	71076	24	29	65634	89	+					
20210223_TTP_P_SILS5675_GB6_1_9628	M-009R3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14267	49973	0	70285	70285	0	0	23036	23036	0	0	33	33	0	0	15756	3656141	111651	3.1	91855	82	287537	70285	67986	24	30	62483	89	+					
20210223_TTP_P_SILS5676_GB7_1_9629	Y-BR1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14121	50141	0	73000	73000	0	0	15516	15516	0	0	21	21	0	0	10784	3764247	116234	3.1	96367	83	295558	73002	70433	25	30	65012	89	+					
20210223_TTP_P_SILS5677_GB8_1_9630	Y-BR2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14515	49402	0	77603	77603	0	0	17205	17205	0	0	22	22	0	0	11620	4169367	124171	3	101863	82	325776	77604	74654	24	29	68510	88	+					
20210223_TTP_P_SILS5678_GC1_1_9633	Y-BR3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14622	49369	0	76375	76375	0	0	17151	17151	0	0	22	22	0	0	11751	3942557	120840	3.1	99320	82	314467	76377	73518	24	29	67529	88	+					
20210223_TTP_P_SILS5679_GC2_1_9634	Y-DR3	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14559	49205	0	75398	75398	0	0	16637	16637	0	0	22	22	0	0	11594	3789269	118861	3.1	98023	82	303425	75398	72651	25	30	66909	89	+					
20210223_TTP_P_SILS5680_GC3_1_9635	Y-DR4	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14608	49200	0	76587	76587	0	0	17500	17500	0	0	23	23	0	0	12074	3965655	121488	3.1	99910	82	312231	76589	73814	25	29	67879	89	+					
20210223_TTP_P_SILS5681_GC4_1_9636	Y-DR5	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	2		TIMS-DDA		14015	50154	0	73626	73626	0	0	16841	16841	0	0	23	23	0	0	11741	3679981	115928	3.2	96234	83	292650	73628	70955	25	30	65549	89	+					
Total																		812989	3043822	0	3537225	3537225	0	0	930734	930734	0	0	26	26	0	0	41831	193165794					14008895	3537493	3389913	25	30	3165307	89		0	0	0	0