Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param LMap_Varisco_A1AT_3911_P_Bane_06Apr21_20-11-16 A1AT_3911 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9185 54945 0 62051 47839 0 14212 27511 26587 0 924 44.34 55.58 NaN 6.5 21003 1305145 51762 3.97 1686 3.26 162476 43787 43265 26.95 31.22 3246 7.41 + 0.67315 0.95469 0.47374 0.71435 LMap_Varisco_A1AT_3933_P_Bane_06Apr21_20-11-16 A1AT_3933 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9347 53481 0 60277 46683 0 13594 25891 25015 0 876 42.95 53.58 NaN 6.44 20516 1221602 50131 4.1 1854 3.7 153164 42405 41974 27.69 32.31 3374 7.96 + 0.67013 0.95967 0.45131 0.68293 LMap_Varisco_A1AT_3934_P_Bane_06Apr21_20-11-16 A1AT_3934 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9406 53030 0 59811 46249 0 13562 24903 24111 0 792 41.64 52.13 NaN 5.84 19761 1245074 49671 3.99 1803 3.63 156094 42040 41683 26.93 31.92 3299 7.85 + 0.64817 0.91936 0.42626 0.63763 LMap_Varisco_A1AT_3936_P_Bane_06Apr21_20-11-16 A1AT_3936 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9498 52595 0 60196 44992 0 15204 23073 22280 0 793 38.33 49.52 NaN 5.22 18518 1214336 49070 4.04 1770 3.61 151372 40898 40495 27.02 32.21 3249 7.94 + 0.65038 0.92586 0.42367 0.63624 LMap_Varisco_A1AT_3937_P_Bane_06Apr21_20-11-16 A1AT_3937 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9412 52819 0 59277 46361 0 12916 21622 20992 0 630 36.48 45.28 NaN 4.88 17364 1230100 49454 4.02 1829 3.7 154705 42045 41661 27.18 32.17 3376 8.03 + 0.63522 0.91108 0.39604 0.59246 LMap_Varisco_Cela1_3912_P_Bane_06Apr21_20-11-16 Cela1_3912 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9249 54087 0 60846 47326 0 13520 26523 25721 0 802 43.59 54.35 NaN 5.93 20822 1239838 50906 4.11 1722 3.38 156423 43269 42802 27.66 32.06 3248 7.51 + 0.66962 0.95286 0.46142 0.69701 LMap_Varisco_Cela1_3914_P_Bane_06Apr21_20-11-16 Cela1_3914 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9460 52565 0 60155 44975 0 15180 24179 23364 0 815 40.19 51.95 NaN 5.37 19336 1292984 49566 3.83 1562 3.15 155064 41316 40904 26.64 31.16 3038 7.35 + 0.6734 0.95042 0.45515 0.68247 LMap_Varisco_Cela1_3915_P_Bane_06Apr21_20-11-16 Cela1_3915 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9481 52487 0 59805 45169 0 14636 23469 22664 0 805 39.24 50.18 NaN 5.5 18545 1240029 48992 3.95 1836 3.75 151843 40951 40566 26.97 31.92 3337 8.15 + 0.662 0.94204 0.43349 0.65097 LMap_Varisco_Cela1_3953_P_Bane_06Apr21_20-11-16 Cela1_3953 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9425 52827 0 60155 45497 0 14658 23615 22831 0 784 39.26 50.18 NaN 5.35 18702 1228571 49313 4.01 1792 3.63 151778 41210 40839 27.15 32.06 3389 8.22 + 0.64553 0.92186 0.42061 0.63612 LMap_Varisco_Cela1_3955_P_Bane_06Apr21_20-11-16 Cela1_3955 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9421 52859 0 59748 45970 0 13778 22957 22252 0 705 38.42 48.41 NaN 5.12 18551 1234446 49640 4.02 1707 3.44 154433 41945 41532 27.16 31.93 3226 7.69 + 0.64375 0.91951 0.41354 0.6256 LMap_Varisco_DKO_3886_P_Bane_06Apr21_20-11-16 DKO_3886 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9292 53930 0 60240 47618 0 12622 27140 26224 0 916 45.05 55.07 NaN 7.26 21019 1222324 50423 4.13 1949 3.87 155962 43005 42589 27.57 32.74 3568 8.3 + 0.66318 0.94837 0.45372 0.6859 LMap_Varisco_DKO_3888_P_Bane_06Apr21_20-11-16 DKO_3888 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9340 53597 0 61729 45465 0 16264 25161 24274 0 887 40.76 53.39 NaN 5.45 19914 1251632 50182 4.01 1667 3.32 150534 41565 41092 27.61 32.12 3194 7.68 + 0.6596 0.94135 0.44918 0.68218 LMap_Varisco_DKO_3960_P_Bane_06Apr21_20-11-16 DKO_3960 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9353 53460 0 60982 45938 0 15044 25148 24300 0 848 41.24 52.9 NaN 5.64 19821 1260084 50153 3.98 1697 3.38 154746 41992 41537 27.14 31.57 3219 7.67 + 0.66073 0.93826 0.44778 0.67715 LMap_Varisco_DKO_3961_P_Bane_06Apr21_20-11-16 DKO_3961 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9459 52449 0 59199 45697 0 13502 23044 22318 0 726 38.93 48.84 NaN 5.38 18636 1200493 49121 4.09 1775 3.61 149019 41521 41112 27.86 32.67 3266 7.87 + 0.65085 0.93094 0.42197 0.63944 LMap_Varisco_DKO_3965_P_Bane_06Apr21_20-11-16 DKO_3965 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9430 52604 0 58972 46236 0 12736 22228 21516 0 712 37.69 46.54 NaN 5.59 17891 1216124 49295 4.05 1769 3.59 153611 41959 41577 27.32 32.31 3298 7.86 + 0.64098 0.92615 0.40357 0.61358 LMap_Varisco_WT_3889_P_Bane_06Apr21_20-11-16 WT_3889 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9141 54812 0 62331 47289 0 15042 26879 25968 0 911 43.12 54.91 NaN 6.06 21288 1245799 51539 4.14 1776 3.45 155111 43170 42387 27.83 32.28 3274 7.58 + 0.66348 0.94947 0.45007 0.68225 LMap_Varisco_WT_3890_P_Bane_06Apr21_20-11-16 WT_3890 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9242 54196 0 62138 46254 0 15884 25620 24728 0 892 41.23 53.46 NaN 5.62 20074 1308867 51135 3.91 1532 3 158592 42554 42081 26.83 30.79 3034 7.13 + 0.67516 0.95778 0.46842 0.7048 LMap_Varisco_WT_3899_P_Bane_06Apr21_20-11-16 WT_3899 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9269 53882 0 61175 46589 0 14586 25412 24612 0 800 41.54 52.83 NaN 5.48 20049 1268998 50734 4 1691 3.33 156294 42622 42182 27.27 31.52 3248 7.62 + 0.67521 0.95505 0.45762 0.68703 LMap_Varisco_WT_3900_P_Bane_06Apr21_20-11-16 WT_3900 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9270 53789 0 60514 47064 0 13450 25657 24897 0 760 42.4 52.9 NaN 5.65 20476 1233961 50736 4.11 1652 3.26 154952 43132 42681 27.84 32.01 3166 7.34 + 0.65917 0.94126 0.44354 0.67534 LMap_Varisco_WT_3902_P_Bane_06Apr21_20-11-16 WT_3902 Trypsin Specific False Oxidation (M);Acetyl (Protein N-term) False True 1 2 Standard 9288 53576 0 60229 46921 0 13308 25164 24435 0 729 41.78 52.08 NaN 5.48 20068 1225096 50549 4.13 1654 3.27 153281 43100 42687 28.12 32.28 3154 7.32 + 0.66992 0.9578 0.45387 0.69171 A1AT_3911 21003 A1AT_3933 20516 A1AT_3934 19761 A1AT_3936 18518 A1AT_3937 17364 Cela1_3912 20822 Cela1_3914 19336 Cela1_3915 18545 Cela1_3953 18702 Cela1_3955 18551 DKO_3886 21019 DKO_3888 19914 DKO_3960 19821 DKO_3961 18636 DKO_3965 17891 WT_3889 21288 WT_3890 20074 WT_3899 20049 WT_3900 20476 WT_3902 20068 Total 186968 1067990 0 1209830 926132 0 283698 495196 479089 0 16107 40.93 51.73 NaN 5.68 39932 24885503 3089454 844486 835646 27.33 31.95 65203 7.72 0.66009 0.94105 0.44148 0.66742