Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS submitted	MS/MS submitted (SIL)	MS/MS submitted (ISO)	MS/MS submitted (PEAK)	MS/MS identified	MS/MS identified (SIL)	MS/MS identified (ISO)	MS/MS identified (PEAK)	MS/MS identified [%]	MS/MS identified (SIL) [%]	MS/MS identified (ISO) [%]	MS/MS identified (PEAK) [%]	Peptide sequences identified	Peaks	Peaks sequenced	Peaks sequenced [%]	Peaks repeatedly sequenced	Peaks repeatedly sequenced [%]	Isotope patterns	Isotope patterns sequenced	Isotope patterns sequenced (z>1)	Isotope patterns sequenced [%]	Isotope patterns sequenced (z>1) [%]	Isotope patterns repeatedly sequenced	Isotope patterns repeatedly sequenced [%]	Recalibrated	Av. absolute mass deviation [ppm]	Mass standard deviation [ppm]	Av. absolute mass deviation [mDa]	Mass standard deviation [mDa]	Label free norm param
10_1_A	C3-L_10_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		14080	49903	0	55192	44604	0	10588	10057	9912	0	145	18	22	0	1.4	5861	1885266	36406	1.9	8223	23	157017	28714	27942	18	21	10030	35	+	0.4953	0.66399	0.33176	0.46828	
11_1_A	C3-L_11_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		12352	62143	0	68063	56209	0	11854	20494	20179	0	315	30	36	0	2.7	12149	1713911	47503	2.8	9482	20	166170	38150	37284	23	26	12174	32	+	0.46884	0.65666	0.32737	0.48257	
12_1_A	C3-L_12_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13139	55658	0	60913	50399	0	10514	15234	14983	0	251	25	30	0	2.4	8913	1874671	41648	2.2	8944	21	169081	33353	32547	20	23	11256	34	+	0.46894	0.64466	0.31862	0.45914	
13_1_A	L-C3_13_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		12544	59841	0	66334	53336	0	12998	16042	15783	0	259	24	30	0	2	9454	1738556	44949	2.6	9132	20	162046	35460	34618	22	25	11578	33	+	0.4761	0.65996	0.32971	0.4799	
14_1_A	L-C3_14_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		15573	36368	0	39735	32981	0	6754	5430	5367	0	63	14	16	0	0.93	3230	2058972	25846	1.3	6448	25	160434	20962	20284	13	16	7561	36	+	0.53468	0.68235	0.34112	0.44871	
15_1_A	L-C3_15_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		15405	36717	0	39950	33474	0	6476	7123	7035	0	88	18	21	0	1.4	4410	2061962	26362	1.3	6561	25	165700	21788	21020	13	16	7634	35	+	0.52315	0.67985	0.3317	0.4471	
1_1_A	DMSO_1_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		14474	46734	0	51273	42181	0	9092	9401	9259	0	142	18	22	0	1.6	5584	1957596	33982	1.7	7851	23	161226	27280	26479	17	20	9461	35	+	0.48624	0.64823	0.32198	0.44868	
2_1_A	DMSO_2_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		12861	58469	0	64179	52749	0	11430	15995	15729	0	266	25	30	0	2.3	9460	1800605	44091	2.4	9320	21	166403	35453	34519	21	24	11530	33	+	0.46042	0.6428	0.31839	0.46983	
3_1_A	DMSO_3_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13466	53390	0	58795	47977	0	10818	12338	12101	0	237	21	25	0	2.2	7435	1902656	39737	2.1	8611	22	167562	31921	31048	19	22	10457	33	+	0.49464	0.67341	0.33582	0.48161	
4_1_A	LPS_4_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13511	53098	0	58409	47775	0	10634	12325	12117	0	208	21	25	0	2	7257	1898151	39342	2.1	8481	22	166408	31420	30578	19	22	10450	33	+	0.49503	0.67231	0.33758	0.48395	
5_1_A	LPS_5_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13317	54693	0	60163	49213	0	10950	13509	13314	0	195	22	27	0	1.8	7852	1857686	40402	2.2	8882	22	164485	32301	31519	20	23	10910	34	+	0.45272	0.62954	0.30708	0.45065	
6_1_A	LPS_6_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13527	53179	0	58832	47512	0	11320	10877	10720	0	157	18	23	0	1.4	6358	1919400	39587	2.1	8410	21	166104	31248	30356	19	22	10367	33	+	0.48606	0.65515	0.33281	0.47285	
7_1_A	C3_7_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		12750	58990	0	64850	53128	0	11722	16199	15936	0	263	25	30	0	2.2	9647	1843641	44229	2.4	9244	21	168731	35527	34662	21	24	11559	33	+	0.48726	0.67396	0.33548	0.49063	
8_1_A	C3_8_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		13020	56539	0	61870	51198	0	10672	15351	15111	0	240	25	30	0	2.2	8898	1828427	41730	2.3	9259	22	164993	33327	32598	20	23	11464	34	+	0.478	0.65947	0.32779	0.47719	
9_1_A	C3_9_A	Trypsin/P;LysC	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Iodoethanol			False	False	1	2		Standard		12482	60251	0	66203	54293	0	11910	17441	17215	0	226	26	32	0	1.9	10196	1774519	45431	2.6	9340	21	167245	36283	35501	22	25	11800	33	+	0.46567	0.65067	0.32165	0.47343	
Total																		202501	795973	0	874761	717029	0	157732	197816	194761	0	3055	23	27	0	1.9	16119	28116019					2473605	473187	460955	19	22	158231	33		0.47972	0.65776	0.32695	0.47195