MassIVE MSV000095922

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GNPS - Metabolite-Driven Mechanisms Reveal Chemical Ecology of Lehmann Lovegrass Invasion in North American Semi-Arid Ecosystems

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Description

This dataset comprises raw LC-MS data generated from a study examining the root and rhizosphere metabolomes of of Lehmann lovegrass (Eragrostis lehmanniana) and Arizona cottontop (Digitaria californica) in both canopy and inter-canopy regions under velvet mesquite trees (Prosopis velutina) at the Santa Rita Experimental Range (SRER) in Arizona. Samples were collected from twelve 1m x 1m plots representing two dominant plant species (Lehmann lovegrass and Arizona cottontop) across two canopy conditions (closed and open), resulting in 36 root and rhizosphere samples. [doi:10.25345/C5Z892S5X] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Plant ; Rhizosphere

Contact

Principal Investigators:
(in alphabetical order) 		Malak M. Tfaily, University of Arizona, United States
Submitting User: benyang
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Experimental Design
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Identification Results
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Quantification Results
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GNPS content goes here (MSV000095922 [task=e439d8879ed44c83822512fd035f7889])
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When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.