Data processing was performed with Skyline (3.1.1.8669) as described in the original manuscript for TripleTOF 6600, Iteration 2, Navarro et al., 2016. The MSstats report was exported for further analysis. The quantification result is the same as in RMSV000000250.1. The differential abundance analysis was performed by MSstats (v3.16.2) R package: Uninformative features and outliers were flagged by feature selection algorithm and removed for this reanalysis. Details for data processing and statistical analysis are available in description.pdf ('Methods' folder).
**Publication : Tsai TH, Choi M, Banfai B, Liu Y, MacLean BX, Dunkley T, Vitek O. (2020). Selection of features with consistent proles improves relative protein quantification in mass spectrometry experiments. Molecular & Cellular Proteomics. 2020 March 31, 19(6) 944-959, doi:10.1074/mcp.RA119.001792. PMID: 32234965.
[doi:10.25345/C5C155]
[See
results attachment job
for details]
Keywords: MassIVE.quant reviewed - Platinum
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Browse Quantification Results | Browse Metadata |
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