The dataset included 16 proteins in ten dilution steps into three different backgrounds(water, whole-cell protein extracts from human or yeast). We used the datasets with human cell protein extracts background. Details are described in Rost, et al., 2014. Quantification from the supplementary data from Rost, et al., 2014 was used for further analysis. The differential abundance analysis was performed by MSstats (v3.13.5) R package. Details for data processing and statistical analysis are available in description.pdf. **Publication : Choi et al. MSstats increases the reproducibility of detecting differentially abundant proteins across tools that process raw mass spectra. (Under revision)
[doi:10.25345/C53T60]
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Keywords: MassIVE.quant reviewed - Platinum
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