MassIVE title 5 Rosenthal_Zebrafish_TurboID_P88_SAINT5454_TurboID_transgenics_conditions_2021
SAINT Task ID 5454
This dataset consists of 22 raw MS files and associated peak lists and result files comprising of transgenics (heat-shock) analysis of the TurboID and comparison of conditions (biotin and heat shock timing and concentration).
This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish.
Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: 5454
[doi:10.25345/C5924H]
[dataset license: CC0 1.0 Universal (CC0 1.0)]
Keywords: BioID ; TurboID ; proximity-dependent biotinylation ; zebrafish ; protein-protein interaction ; in vivo labeling
Principal Investigators: (in alphabetical order) |
Anne-Claude Gingras, Lunenfeld-Tanenbaum Research Institute, Canada |
Submitting User: | gingraslab |
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Owner | Reanalyses | |
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Browse Dataset Files | Browse Results |
FTP Download Link (click to copy):
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