MassIVE MSV000087542

Partial Public PXD026357

Quantitative proteomic atlas of soybean-rhizobium symbiotic interface

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Description

An effective symbiosis between legumes and rhizobia relies largely on the diverse proteins on the plant-rhizobium interface, the symbiosome membrane (SM) and peribacteroid space (PBS), for material transportation and signal transduction during symbiotic nitrogen fixation. Employing higher resolution, faster scanning speed, and higher sensitivity LC-MS/MS technique, combining with label-free quantitative proteomic approaches, here we identified more than a thousand soybean proteins and hundreds of rhizobia proteins for either SM or PBS. [doi:10.25345/C5BG0F] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: symbiosome, soybean, rhizobium, label-free quantitative proteomics

Contact

Principal Investigators:
(in alphabetical order) 		Wei-Cai Yang, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, China
Submitting User: luoyudorothy

Publications

Yu Luo, Wei Liu, Juan Sun, Zheng-Rong Zhang, and Wei-Cai Yang.
Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome.
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Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.