MassIVE.quant Datasets

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Submitted MassIVE Datasets
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TitleSubmission
Type
KeywordsQuantitative
Analysis
ConditionsBiological
Replicates
Technical
Replicates
Quantified
Proteins
Differentially
Abundant
Proteins
Principal
Investigator
SpeciesInstrument# Quant
Reanalyses
Reanalysis
Containers
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1
PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia
MSV000096019 | PXD056483
Partial
  • +PU.1
  • +Quantification Results
00000
  • Duohui Jing
  • Homo sapiens (NCBITaxon:9606)
  • timsTOF HT
0N/AOct. 3, 2024, 7:47 AM
  • UNIMOD:35 - "Oxidation or Hydroxylation."
2
ATF6 promotes colorectal cancer growth and stemness by regulating the Wnt pathway
MSV000095581
Partial
  • ATF6, IRE1, unfolded protein response, Wnt signaling pathway
  • +Quantification Results
0008,9626,393
  • Avi Ashkenazi
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Eclipse
0N/AAug. 12, 2024, 12:57 PM
  • +Fixed Mod: C (+57.0215), K (+304.2071), peptide N-term (+304.2071)
3
IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport
MSV000095101 | PXD053277
Partial
  • endoplasmic reticulum, COPII, anterograde transport, microcephaly, diabetes, axon pathfinding, cortical development
  • +Quantification Results
24100
  • Christoph Kaether
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Exploris 480
0N/AJun. 21, 2024, 1:05 AM
  • +UNIMOD:35 - "Oxidation or Hydroxylation."
4
Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation
MSV000093150 | PXD046229
Partial
  • +TMT
  • +Quantification Results
618110,0579,086
  • Claire G. Jeong
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Eclipse
0N/AOct. 18, 2023, 11:29 PM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
5
CPTAC CCRCC Discovery Study - DIA Proteome
MSV000093041
Partial
  • CPTAC
  • +Quantification Results
00000
  • Hui Zhang
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion Lumos
0Oct. 4, 2023, 4:00 PM
  • +UNIMOD:4 - "Iodoacetamide derivative."
6
Chronic UCN2 Treatment Desensitizes CRHR2 and Improves Insulin Sensitivity
MSV000092094 | PXD042709
Complete
  • UCN2, CRHR2, phosphoproteomics, Acute, Gastrocnemius, skeletal muscle
  • +Quantification Results
00000
  • Zhidan Wu
  • Mus musculus (NCBITaxon:10090)
  • Orbitrap Fusion Lumos
0N/AJun. 4, 2023, 5:29 AM
  • UNIMOD:21 - "Phosphorylation."
7
DOCK8 is a Novel Regulator of Lysosome Mediated Pancreatic Cancer Invasion
MSV000091036 | PXD039351
Partial
  • Metastasis, invasion, pancreatic cancer, lysosome, matrix degradation
  • +Quantification Results
00000
  • Gina L Razidlo
  • Mus musculus (NCBITaxon:10090)
  • Q Exactive
0N/AJan. 10, 2023, 9:25 AM
  • +UNIMOD:4 - "Iodoacetamide derivative."
8
TEAD is required for DNA repair independent of its transcriptional function
MSV000090760 | PXD038226
Partial
  • +TEAD
  • +Quantification Results
412100
  • Jennie Lill
  • Homo sapiens (NCBITaxon:9606)
  • LTQ Orbitrap Elite
0N/ANov. 21, 2022, 3:05 PM
  • +MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
9
Volpatti_Myopathy_P124_Lumos_VS8
MSV000089872 | PXD035277
Partial
  • +X-linked myotubular myopathy
  • +Quantification Results
00000
  • Karen Colwill
  • Mus musculus (NCBITaxon:10090)
  • Orbitrap Fusion Lumos
0N/AJul. 12, 2022, 12:00 PM
  • +MOD:00684 - "A protein modification that effectively converts an L-asparagine residue to L-aspartic acid."
10
Sarikaya_HistoryMyopathy_P124_Lumos
MSV000089841 | PXD035161
Partial
  • +X-linked myotubular myopathy
  • +Quantification Results
00000
  • Karen Colwill
  • Mus musculus (NCBITaxon:10090)
  • Orbitrap Fusion Lumos
0N/AJul. 7, 2022, 9:56 AM
  • +MOD:00684 - "A protein modification that effectively converts an L-asparagine residue to L-aspartic acid."
11
Mablango_ClpP_HYTANE_P124_Lumos
MSV000089642
Partial
  • +ClpP
  • +Quantification Results
00000
  • Anne-Claude Gingras
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion Lumos
0N/AJun. 13, 2022, 11:16 AM
  • +UNIMOD:893 - "Carbamidomethylated DTT modification of cysteine."
12
Repurposing E3 ubiquitin ligases as cell surface protein degraders using Proteolysis Targeting Antibodies
MSV000089542
Partial
  • +TMT
  • +Quantification Results
0008,1733,765
  • Felipe de Sousa e Melo
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Eclipse
0N/AMay. 25, 2022, 5:54 AM
  • MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
13
Spike-in benchmark study : Ubiquitination, Label-free experiments
MSV000088971
Partial
  • +quantitative mass spectrometry
  • +Quantification Results
48216,8667,861
  • +Olga Vitek
  • +Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion Lumos
1Mar. 2, 2022, 7:52 AM
  • +UNIMOD:35 - "Oxidation or Hydroxylation."
14
Reanalysis of Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism in Proteome Discoverer 2.5
MSV000088522
Partial
  • Thermal Proteome Profiling, Zebrafish, thermal shift assays
  • +Quantification Results
204100
  • Simone Lemeer
  • Danio rerio (NCBITaxon:7955)
  • Q Exactive HF-X
0Dec. 6, 2021, 7:54 AM
  • +[M] [15.99492] Oxidation UNIMOD:35
15
An ultrasensitive method for analysis of viral spike N-glycoforms
MSV000087414 | PXD025990
Partial
  • +Proteinase K
  • +Quantification Results
00000
  • John R. Yates III
  • +Homo sapiens (NCBITaxon:9606)
  • +Q Exactive HF-X
0N/AMay. 12, 2021, 8:28 PM
  • +UNIMOD:43 - "N-Acetylhexosamine."
16
Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injury
MSV000086623 | PXD023255
Partial
  • +DIA
  • +Quantification Results
17425279231
  • Baris Bingol
  • Sprague Dawley
  • Orbitrap Fusion Lumos
0N/ADec. 21, 2020, 9:05 AM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
17
A Quantitative Proteome Map of the Human Body
MSV000086387 | PXD016999
Partial
  • quantitative proteomics of 32 normal human tissues
  • +Quantification Results
335629,1548,913
  • mike snyder
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion
1Oct. 30, 2020, 2:18 AM
  • +MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
18
Urine proteomics profiling of the COVID-19
MSV000085516 | PXD018970
Partial
  • +Urine proteomics
  • +Quantification Results
44032,232902
  • Ping Xu
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion Lumos
1May. 30, 2020, 12:44 PM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
19
Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus
MSV000085510 | PXD018594
Complete
  • +coronavirus
  • +Quantification Results
22101,6221,008
  • Jean Armengaud
  • +Betacoronavirus sp. (NCBITaxon:1928434)
  • MS:1002523
1May. 29, 2020, 4:50 PM
  • +UNIMOD:7 - "Deamidation."
20
GNPS - Proteomic and Metabolomic Characterization of COVID-19 Patient Sera
MSV000085507 | PXD019221
Partial
  • +COVID-19
  • +Quantification Results
891261,417692
  • Tiannan Guo
  • +Homo sapiens
  • Q Exactive HF
4May. 29, 2020, 3:11 PM
  • +UNIMOD:4 - "Iodoacetamide derivative."
21
Inhibition of growth factor signaling prevents SARS-CoV-2 replication
MSV000085494 | PXD018357
Partial
  • +TMT
  • +Quantification Results
2657,5975,787
  • Christian M�nch
  • Homo sapiens (NCBITaxon:9606)
  • Orbitrap Fusion Lumos
4May. 28, 2020, 7:24 PM
  • +MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
22
The effect of pathogen inactivation on cryoprecipitate: A functional and quantitative evaluation
MSV000085374 | PXD018986
Partial
  • +plasma
  • +Quantification Results
00000
  • +Matthew W. Foster
  • Homo sapiens (NCBITaxon:9606)
  • Q Exactive HF-X
0N/AMay. 4, 2020, 9:07 PM
  • MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
23
Proteomics of SARS-CoV and SARS-CoV-2 infected cells
MSV000085349 | PXD018581
Partial
  • +COVID19
  • +Quantification Results
96748,1205,609
  • Matthias Selbach
  • Homo sapiens (NCBITaxon:9606)
  • MS:1002877
1Apr. 28, 2020, 5:11 PM
  • MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
24
Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors
MSV000085343 | PXD014414
Partial
  • +metaplastic breast carcinoma
  • +Quantification Results
32716,004728
  • Celina G. Kleer
  • +Mus musculus (NCBITaxon:10090)
  • Orbitrap Fusion
4Apr. 27, 2020, 8:17 PM
  • +MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
25
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Purposing
MSV000085144 | PXD018117
Partial
  • +SARS-CoV-2
  • +Quantification Results
319518,47560
  • Nevan Krogan
  • +Homo sapiens
  • MS:1002526
1Mar. 24, 2020, 10:57 AM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
26
Proteome and Translatome of SARS-CoV-2 infected cells
MSV000085096 | PXD017710
Partial
  • +SARS-CoV-2
  • +Quantification Results
11322,1942,004
  • Christian M�nch
  • +Homo sapiens
  • MS:1002523
1Mar. 13, 2020, 12:59 AM
  • +MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
27
samon_1803_DIA_HSPC
MSV000084982 | PXD009255
Partial
  • +human
  • +Quantification Results
42015,5903,094
  • Ruedi Aebersold
  • Homo sapiens
  • Orbitrap Fusion Lumos
1Feb. 19, 2020, 8:14 PM
  • MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
28
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells - B2AR_localization
MSV000084967 | PXD017571
Partial
  • +GPCR
  • +Quantification Results
8241179
  • Ruth Huttenhain
  • Homo sapiens
  • TSQ Quantiva
0N/AFeb. 17, 2020, 6:57 PM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
29
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells - B2AR_DOR
MSV000084966 | PXD017570
Partial
  • +GPCR
  • +Quantification Results
131919363
  • Ruth Huttenhain
  • Homo sapiens
  • TSQ Quantiva
0N/AFeb. 17, 2020, 6:50 PM
  • MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
30
ARIH2 is a Vif-dependent regulator of CUL5-mediated APOBEC3G degradation in HIV infection: SRM_CBFB_CUL2_CUL5_interactors
MSV000084965 | PXD017567
Partial
  • +Host-virus interactions
  • +Quantification Results
41812013
  • Nevan J. Krogan
  • +Homo sapiens
  • TSQ Quantiva
0N/AFeb. 17, 2020, 5:47 PM
  • +MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."

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