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TEAD is required for DNA repair independent of its transcriptional functionMSV000090760 | PXD038226
Partial
+TEAD
GeLS-MS
Spectrum counting
+Quantification Results
Differential Abundance Results
Study Design
4
12
1
0
0
Jennie Lill
Homo sapiens (NCBITaxon:9606)
LTQ Orbitrap Elite
0
N/A
Nov. 21, 2022, 3:05 PM
+MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
+UNIMOD:893 - "Carbamidomethylated DTT modification of cysteine."
MOD:00719 - "A protein modification that oxygenates an L-methionine residue to one of the diastereomeric L-methionine sulfoxide residues."
UNIMOD:24 - "Acrylamide adduct."
UNIMOD:1 - "Acetylation."
UNIMOD:27 - "Pyro-glu from E."
UNIMOD:28 - "Pyro-glu from Q."
UNIMOD:36 - "Di-Methylation."
UNIMOD:199 - "DiMethyl-CHD2."
UNIMOD:330 - "Dimethylated arginine."
12
Repurposing E3 ubiquitin ligases as cell surface protein degraders using Proteolysis Targeting AntibodiesMSV000089542
Partial
+TMT
Global proteome profiling
ZNRF3
E3 ubiquitin ligases
+Quantification Results
Differential Abundance Results
Study Design
0
0
0
8,173
3,765
Felipe de Sousa e Melo
Homo sapiens (NCBITaxon:9606)
Orbitrap Eclipse
0
N/A
May. 25, 2022, 5:54 AM
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
13
Spike-in benchmark study : Ubiquitination, Label-free experimentsMSV000088971
Reanalysis of Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism in Proteome Discoverer 2.5MSV000088522
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
22
The effect of pathogen inactivation on cryoprecipitate: A functional and quantitative evaluationMSV000085374 | PXD018986
Partial
+plasma
apheresis
cryoprecipiate
microflow
data-independent acquisition
+Quantification Results
Differential Abundance Results
Study Design
0
0
0
0
0
+Matthew W. Foster
Reed Kamyszek
Homo sapiens (NCBITaxon:9606)
Q Exactive HF-X
0
N/A
May. 4, 2020, 9:07 PM
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
24
Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumorsMSV000085343 | PXD014414
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
25
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-PurposingMSV000085144 | PXD018117
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00702
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
28
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells - B2AR_localizationMSV000084967 | PXD017571
Partial
+GPCR
APEX
proximity biotinylation
protein-protein interactions
MassIVE.quant reviewed - Platinum
+Quantification Results
Differential Abundance Results
Study Design
8
24
1
17
9
Ruth Huttenhain
Homo sapiens
TSQ Quantiva
0
N/A
Feb. 17, 2020, 6:57 PM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
29
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells - B2AR_DORMSV000084966 | PXD017570
Partial
+GPCR
APEX
proximity biotinylation
protein-protein interactions
MassIVE.quant reviewed - Platinum
+Quantification Results
Differential Abundance Results
Study Design
13
19
1
93
63
Ruth Huttenhain
Homo sapiens
TSQ Quantiva
0
N/A
Feb. 17, 2020, 6:50 PM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
30
ARIH2 is a Vif-dependent regulator of CUL5-mediated APOBEC3G degradation in HIV infection: SRM_CBFB_CUL2_CUL5_interactorsMSV000084965 | PXD017567
Partial
+Host-virus interactions
ARIH2
HIV
vif
CUL5
AP-MS
APOBEC3G
MassIVE.quant reviewed - Platinum
+Quantification Results
Differential Abundance Results
Study Design
4
18
1
20
13
Nevan J. Krogan
+Homo sapiens
Human immunodeficiency virus 1
TSQ Quantiva
0
N/A
Feb. 17, 2020, 5:47 PM
+MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."