Description
The files are associated with a manuscript submitted for publication by Ganna Posternak et al. The main goal of this paper was functionally characterize the mechanism of action of a PROTAC designed to target BRAFV600E.
[doi:10.25345/C5F678]
[dataset license: CC0 1.0 Universal (CC0 1.0)]
Keywords: Kinase competition assay ; BRAF ; PROTAC
Contact
Principal Investigators:
(in alphabetical order)
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Anne-Claude Gingras, LTRI, Canada
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| Submitting User: |
gingraslab
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Publications
Ganna Posternak # 1 2 3, Xiaojing Tang # 1, Pierre Maisonneuve # 1, Ting Jin # 4, Hugo Lavoie # 4, Salima Daou 1, Stephen Orlicky 1, Theo Goullet de Rugy 1, Lauren Caldwell 1, Kin Chan 1, Ahmed Aman 2 5, Michael Prakesch 2, Gennady Poda 2 5, Pavel Mader 1, Cassandra Wong 1, Stefan Maier 1, Julia Kitaygorodsky 1 6, Brett Larsen 1, Karen Colwill 1, Zhe Yin 1 7, Derek F Ceccarelli 1, Robert A Batey 3, Mikko Taipale 6 8, Igor Kurinov 9, David Uehling 2, Jeff Wrana 1 6, Daniel Durocher 1 6, Anne-Claude Gingras 1 6, Rima Al-Awar 2, Marc Therrien 10 11, Frank Sicheri 12 13 14.
Functional characterization of a PROTAC directed against BRAF mutant V600E.
Nat Chem Biol . 2020 Nov;16(11):1170-1178. doi: 10.1038/s41589-020-0609-7. Epub 2020 Aug 10.
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Conditions:
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Biological Replicates:
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Technical Replicates:
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| Identification Results |
Proteins (Human, Remapped):
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Proteins (Reported):
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PSMs:
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Number of distinct conditions across all analyses (original submission and reanalyses)
associated with this dataset.
Distinct condition labels are counted across all files submitted in the "Metadata" category
having a "Condition" column in this dataset.
"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses)
associated with this dataset.
Distinct replicate labels are counted across all files submitted in the "Metadata" category
having a "BioReplicate" or "Replicate" column in this dataset.
"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses)
associated with this dataset.
The technical replicate count is defined as the maximum number of times any one distinct
combination of condition and biological replicate was analyzed across all files submitted in the
"Metadata" category. In the case of fractionated experiments, only the first fraction is
considered.
"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically
remapped by MassIVE to proteins in the
SwissProt
human reference database.
"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and
reanalyses) associated with this dataset.
"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original
submission and reanalyses) associated with this dataset.
"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported
across all analyses (original submission and reanalyses) associated with this dataset.
"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all
analyses (original submission and reanalyses) associated with this dataset.
"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses)
associated with this dataset.
Distinct protein accessions are counted across all files submitted in the "Statistical Analysis
of Quantified Analytes" category having a "Protein" column in this dataset.
"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison
across all analyses (original submission and reanalyses) associated with this dataset.
A protein is differentially abundant if its change in abundance across conditions is found
to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated
with statistical tests for differential abundance.
Distinct protein accessions are counted across all files submitted in the "Statistical Analysis
of Quantified Analytes" category having a "Protein" column in this dataset.
"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE.
It has been imported to MassIVE for reanalysis purposes, so its spectra data here may
consist solely of processed peak lists suitable for reanalysis with most software.