MassIVE MSV000092102

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Structural Organization of the Retriever-CCC endosomal recycling complex

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Description

Protein-protein interaction analysis in Huh7 cells expressing specific VPS35L mutations. LUM2_1066594: EV_rep1 LUM2_1066595: WT_rep1 LUM2_1066596: W6D_rep1 LUM2_1066597: S829E_rep1 LUM2_1066598: G902E_rep1 LUM2_1066599: G325E_rep1 LUM2_1068615: EV_rep2 LUM2_1068616: WT_rep2 LUM2_1068617: W6D_rep2 LUM2_1068618: S829E_rep2 LUM2_1068619: G902E_rep2 LUM2_1068620: G325E_rep2 LUM2_1070655: EV_rep3 LUM2_1070656: WT_rep3 LUM2_1070657: W6D_rep3 LUM2_1070658: S829E_rep3 LUM2_1070659: G902E_rep3 LUM2_1070660: G325E_rep3 [doi:10.25345/C5T727R97] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: endosome recycling ; retriever ; CCC complex

Contact

Principal Investigators:
(in alphabetical order) 		Ezra Burstein, UT Southwestern Medical Center, United States
Submitting User: alemoff
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Experimental Design
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Identification Results
    Proteins (Human, Remapped):
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Quantification Results
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Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.