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Affinity purification mass spectrometry analysis of SARS-CoV-2 and SARS-CoV proteins in A549 cellsMSV000085855 | PXD020222
Homo sapiens (NCBITaxon:9606)
+SARS-CoV-2
SARS-CoV
APMS
A549 cells
CoronaMassKB
0
0
0
15,763
0
0
Andreas Pichlmair
Q Exactive HF
Jul. 30, 2020, 3:29 PM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
2
Fast and low-cost detection of SARS-CoV-2 peptides by tandem mass spectrometry in clinical samplesMSV000085851 | PXD019119
Severe acute respiratory syndrome coronavirus 2 (NCBITaxon:2697049)
+SARS-CoV-2
targeted proteomics
respiratory tract samples
CoronaMassKB
0
0
0
8
0
0
Valdemir Melechco Carvalho
Q Exactive HF
Jul. 30, 2020, 11:26 AM
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
3
Large-scale Multi-omic Analysis of COVID-19 SeverityMSV000085703
Homo sapiens (NCBITaxon:9606)
+SARS-CoV-2
coronavirus
COVID-19
CoronaMassKB
multi-omics
0
0
0
0
0
0
+Joshua Coon
Ariel Jaitovich
+Orbitrap Eclipse
TSQ Quantiva
Q Exactive HF
Q Exactive GC Orbitrap
Jul. 8, 2020, 7:27 PM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
GNPS - Randomized clinical trial for the treatment of moderate to severe cases of the disease caused by the new coronavirus-2019 with chloroquine and placebo versus chloroquine and colchicineMSV000085505
Homo sapiens (NCBITaxon:9606)
+SARS-CoV-2
Covid-19
chloroquine
colchicine
CoronaMassKB
0
0
0
0
0
0
Thiago Mattar Cunha
micrOTOF-Q II
May. 29, 2020, 1:38 PM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
10
Inhibition of growth factor signaling prevents SARS-CoV-2 replicationMSV000085494 | PXD018357
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
+UNIMOD:765 - "Removal of initiator methionine from protein N-terminus."
UNIMOD:7 - "Deamidation."
UNIMOD:766 - "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus."
UNIMOD:35 - "Oxidation or Hydroxylation."
UNIMOD:1 - "Acetylation."
UNIMOD:4 - "Iodoacetamide derivative."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
14
Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site.MSV000085205 | PXD018241
+MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group."
MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
15
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-PurposingMSV000085144 | PXD018117
+MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group."
MOD:00506 - "modification from UniMod N-linked glycosylation, Hex(5) HexNAc(2)"
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
17
LC-MS/MS EThcD of MERS-CoV and SARS-CoV S N-linked glycopeptides from recombinant spike ectodomains and whole MERS virionsMSV000085097 | PXD010494
+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group."
MOD:00702
MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
19
GNPS - Mouse lung metabolome response to an icMERS coronavirus MM001MSV000083537
+Mus musculus
Middle East respiratory syndrome-related coronavirus
+omics
metabolomics
MERS-CoV
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
Agilent GC-MS
Mar. 5, 2019, 11:31 AM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
20
GNPS - Mouse lung lipidome response to an icMERS coronavirus MM001MSV000083536
+Mus musculus
Middle East respiratory syndrome-related coronavirus
+omics
lipidomics
MERS-CoV
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
LTQ Orbitrap Velos
Mar. 5, 2019, 11:25 AM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
21
GNPS - Primary human airway epithelial cells lipidome response to an icMERS coronavirus MHAE003MSV000083535
+Homo sapiens
Middle East respiratory syndrome-related coronavirus
+omics
lipidomics
MERS-CoV
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
LTQ Orbitrap Velos
Mar. 5, 2019, 11:23 AM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
22
GNPS - Primary human airway epithelial cells lipidome response to an icMERS coronavirusMSV000083534
+Homo sapiens
Middle East respiratory syndrome-related coronavirus
+omics
lipidomics
MERS-CoV
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
LTQ Orbitrap Velos
Mar. 5, 2019, 11:19 AM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
23
GNPS - Primary human airway epithelial cells lipidome response to an icMERS coronavirusMSV000083533
+Homo sapiens
Middle East respiratory syndrome-related coronavirus
+omics
lipidomics
MERS-CoV
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
LTQ Orbitrap Velos
Mar. 5, 2019, 11:15 AM
MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
24
GNPS - Mouse lung proteome response to an icMERS coronavirusMSV000083532
+Mus musculus
Middle East respiratory syndrome-related coronavirus
+omics
proteomics
CoronaMassKB
0
0
0
0
0
0
+Katrina Waters
Yoshihiro Kawaoka
Richard Smith
Thomas Metz
Ralph Baric
LTQ Orbitrap Velos
Mar. 5, 2019, 11:11 AM
+UNIMOD:4 - "Iodoacetamide derivative."
UNIMOD:35 - "Oxidation or Hydroxylation."
25
GNPS - Primary human airway epithelial cells proteome response to an icMERS coronavirusMSV000083531
+Homo sapiens
Middle East respiratory syndrome-related coronavirus