MassIVE MSV000098920

Complete Public PXD067641

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

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Description

Investigating how diurnal photoacclimation influences algal fitness and documenting the molecular events during reacclimation upon a change in daylight intensity. Samples were digested with trypsin, labeled with TMT 11-Plex, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. [doi:10.25345/C5W669N43] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: diel ; photoprotection ; NPQ ; chloroplast swelling ; UPR ; DatasetType:Proteomics

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Principal Investigators:
(in alphabetical order) 		Sabeeha Merchant, California Institute for Quantitative Biosciences, University of California, Berkeley, USA
Submitting User: alchemistmatt
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Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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