MassIVE MSV000087369

Partial Public

GNPS Xconnector: Retrieving and visualizing metabolites and pathways information from various database sources

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Description

The diversity of the metabolomics databases arises from the different data types included within the database originating from various sources and experiments can be confusing for biologists and researchers who need further manual investigation for the retrieved data. Xconnector is a software package designed to easily retrieve and visualize metabolomics data from different databases. A human leukemia cell line (HL-60) sample was analyzed to validate the use of Xconnector. The metabolites separation was carried out using a SCIEX Exion LCTM UHPLC system. Mass spectrometric analysis was performed using Triple TOFTM 5600+ system equipped with Duo-SprayTM source operated in the ESI mode. [doi:10.25345/C5F521] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Metabolomics ; Software ; Database ; Python

Contact

Principal Investigators:
(in alphabetical order) 		Sameh Magdeldin, Proteomics and metabolomics unit, Basic research department, Children's Cancer Hospital, 57357 Cairo, (CCHE-57357), Egypt
Submitting User: alianwar

Publications

Anwar AM, Ahmed EA, Soudy M, Osama A, Ezzeldin S, Tanios A, Mahgoub S, Magdeldin S.
Xconnector: Retrieving and visualizing metabolites and pathways information from various database resources.
J Proteomics. Epub 2021 Jun 8.

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GNPS content goes here (MSV000087369 [task=2ee97c163d3b4314b0577176a873ac37])
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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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