MassIVE MSV000098667

Partial Public PXD066707

Fibrotic remodeling drives chronic kidney disease in organic acidurias, role of TGFbeta mediated extracellular matrix deposition

Description

Propionic aciduria (PA uria) and methylmalonic aciduria (MMA uria) are rare inborn errors of metabolism caused by defects in the propionate catabolic pathway. While chronic kidney disease (CKD) is a well-established complication in MMA-uria, renal involvement in PA uria has only come into focus more recently, and the underlying mechanisms remain poorly understood. We investigated human renal epithelial cells from patients with PA uria, MMA uria, and healthy controls under metabolic stress, induced by methylmalonic acid, methylcitric acid, high protein, or isoleucine/valine enriched media. Proteomic profiling revealed significant enrichment of extracellular matrix (ECM) related pathways in PA uria cells. Both PA uria and MMA uria cells exhibited increased deposition of fibronectin and collagen fibers, which was further amplified under metabolic stress conditions. Transforming growth factor beta (TGFbeta) signaling was identified as a key profibrotic pathway. Pharmacological inhibition of the TGFbeta receptor signaling normalized fibronectin and collagen deposition in both PA uria and MMA uria cells. Treatment with losartan, an angiotensin II type 1 receptor blocker known to modulate TGFbeta signaling, also reversed the enhanced ECM deposition. This is the first study to mechanistically link ECM remodeling and TGFbeta signaling to CKD pathogenesis in both PA uria and MMA uria. Our findings highlight fibrotic remodeling as a shared pathogenic feature and suggest that losartan, a widely available and well-tolerated drug, could be repurposed to mitigate renal fibrosis in these disorders. [doi:10.25345/C5TM72D5F] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: propionic acuduria, methylmalonic aciduria, chronic kidney disease, fibrosis, extracellular matrixc, TGF-beta signaling, renal epithelial cells ; DatasetType:Proteomics

Contact

Principal Investigators:
(in alphabetical order)
Dr. Dr. Anke Schumann, Faculty of Medicine, Freiburg University Hospital, Germany
Submitting User: Stholen
Number of Files:
Total Size:
Spectra:
Subscribers:
 
Owner Reanalyses
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Dataset Files
 
FTP Download Link (click to copy):

- Dataset Reanalyses


+ Dataset History


Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.