MassIVE MSV000085128

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GNPS_GC_Derivatized human blood serum spiked with standards of FAMEs and hydrocarbons

Description

Post-thawing, human serum samples (30 uL) were sequentially extracted using solvent extraction, once with 1 mL of acetonitrile: isopropanol: water (3:3:2, v/v) ratio , followed by another extraction with 500 uL of acetonitrile: water (1:1, v/v) ratio mixture at 4 C. Adonitol (Cat. No. A5502-5G, Sigma-Aldrich; 5 uL from a 10 mg/ml stock), an internal standard was added to all samples prior to solvent extraction. The pooled extracts (~ 1500 uL) resulting from the two steps were dried in vacuo at 4 C prior to chemical derivatization. Dummy extractions were performed in blank tubes that served as extraction blanks for background subtraction of noise resulting from extraction solvents, derivatization reagents, unwanted sources, and other sources of contamination from the analytical platform, i.e., septa, liner, column, vials, handling etc. All samples (i.e., except FAMEs and n-alkanes) were sequentially derivatized with methoxyamine hydrochloride (MeOX) and 1% TMCS in N-methyl-N-trimethylsilyl-trifluoroacetamide (MSTFA). [doi:10.25345/C5BX19] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: blood ; serum ; FAMEs ; hydrocarbons ; test mix ; derivatization ; GC-MS

Contact

Principal Investigators:
(in alphabetical order)
Biswapriya Misra, Wake Forest School of Medicine, USA
Submitting User: aaksenov
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Experimental Design
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GNPS content goes here (MSV000085128 [task=454cb47795ed4dfc9c0675db67a75c55])
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Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

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Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.