MassIVE MSV000088833

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Quantitative Proteome Remodeling Characterization of Two Human Reference Pluripotent Stem Cell Lines During Neurogenesis and Cardiomyogenesis

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Description

Supporting raw MS data for paper (doi: 10.1002/pmic.202100246) by Nam K.H. et al, titled "Quantitative Proteome Remodeling Characterization of Two Human Reference Pluripotent Stem Cell Lines During Neurogenesis and Cardiomyogenesis". Index of RAW files uploaded: - Related to Figure 1 (KN97-120: whole proteome (Unimod: 35; 2016; 4)). - Related to Figure 2 (KN121-126: phospho proteome (Unimod: 35; 21; 2016; 4)) - Related to Figures 3 and 4 (KN205-228: whole proteome (Unimod: 35; 2016; 4)) [doi:10.25345/C5FP26] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: TMTpro ; ESC ; iPSC ; WA09 ; KOLF2.1J ; Neurogenesis ; Cardiomyogenesis

Contact

Principal Investigators:
(in alphabetical order) 		Alban Ordureau, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, USA
Submitting User: aordureau

Publications

Nam KH, Ordureau A.
Quantitative proteome remodeling characterization of two human reference pluripotent stem cell lines during neurogenesis and cardiomyogenesis.
Proteomics. Epub 2022 Jul 24.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.