MassIVE MSV000094549

Complete Public PXD051469

Suppression of astrocyte BMP signaling improves fragile X syndrome molecular signatures and functional deficits

Description

Fragile X syndrome (FXS) is a monogenic (gene = Fmr1) neurodevelopmental disorder with complex and variable manifestations spanning molecular, neuroanatomical, and behavioral changes. Prior work shows astrocytes and their secreted proteins may contribute to the pathophysiology of FXS, and that the bone morphogenetic protein (BMP) pathway may underlie some of these changes. A conditional knock out (KO) of Smad4 in astrocytes suppresses BMP signaling and lessens the severity of Fmr1 KO audiogenic seizures. Using in vivo transcriptomic and proteomic profiling of astrocytes in the mouse cortex, we find hypermetabolic gene expression programs and downregulated secretory machinery and secreted proteins in Fmr1 KO astrocytes that are moderated by Smad4 cKO. Critically, astrocyte Smad4 conditional KO restores deficits in Fmr1 KO auditory cortex inhibitory synaptic density. Thus, astrocytes can contribute to Fmr1 KO molecular and functional phenotypes, and targeting astrocytes can mitigate FXS symptoms. [doi:10.25345/C5GB1XT70] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Fragile X syndrome (FXS) ; astrocyte ; bone morphogenetic protein (BMP) signaling ; proteomics ; secreted proteins ; transcriptomics

Contact

Principal Investigators:
(in alphabetical order)
Nicola J. Allen, Salk Institute for Biological Studies, USA
Submitting User: jdiedrich
Number of Files:
Total Size:
Spectra:
Subscribers:
 
Owner Reanalyses
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Dataset Files Browse Results
 
FTP Download Link (click to copy):

- Dataset Reanalyses


+ Dataset History


Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.