MassIVE MSV000093065

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GNPS - Integrated analysis of transcriptomics and proteomics approach the importance of ABA-dependent pathways in Mesembryanthemum Crystallinum leaf during the salt induced C 3 to CAM transition

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Description

Mesembryanthemum Crystallinum, a facultative CAM plant, shifts from C 3 to CAM photosynthesis under salt stress, enhancing water use efficiency due to inverse stomatal patterns. Exploring the mechanisms of this transition could improve salt tolerance in C 3 crops. We used transcriptomics, proteomics, and targeted metabolomics every 8 hours to track molecular shifts during this transition. [doi:10.25345/C5000099W] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Mesembryanthemum crystallinum ; C 3 to CAM transition ; transcriptomics ; proteomics ; metabolomics ; ABA-dependent stomatal movement

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Principal Investigators:
(in alphabetical order) 		Sixue Chen, University of Mississippi, United States
Submitting User: takter3
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GNPS content goes here (MSV000093065 [task=7abee22a9135490fb93dc02556792cc7])
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Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

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Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

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Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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