Description
In eukaryotic ribosomes, ~2% of RNA nucleotides undergo 2'-O-methylation, a conserved cellular mechanism thought to be critical for maintaining and regulating translation. Here, we use ribosome profiling, translation assays, proteomics, and high-resolution structural analyses to show that loss of native 2'-O-methylation in yeast ribosomes disproportionally affect the translation of ribosomal protein transcripts, driven by changes in codon usage and recognition of structured RNA. Translation reprograming by the hypomethylated ribosomes is supported by reduced thermostability and high-resolution evidence of altered ribosomal structures and conformations. Consistent with the roles of the affected proteins in sustaining cellular fitness, hypomethylated ribosomes under stress exhibit selective loss of downregulated proteins and misassembly associated with methylation loss. Our data provide structural and mechanistic insights into how 2'-O-methylation supports ribosome integrity and mediates cellular stress responses.
[doi:10.25345/C5NG4H563]
[dataset license: CC0 1.0 Universal (CC0 1.0)]
Keywords: ribosomal RNA modification ; fibrillarin ; DatasetType:Proteomics
Contact
Principal Investigators:
(in alphabetical order)
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Hong Li, Van Andel Institute, United States
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molly_hopper
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Distinct condition labels are counted across all files submitted in the "Metadata" category
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Distinct replicate labels are counted across all files submitted in the "Metadata" category
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Originally identified proteins that were automatically
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SwissProt
human reference database.
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Distinct protein accessions are counted across all files submitted in the "Statistical Analysis
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Number of distinct proteins found to be differentially abundant in at least one comparison
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A protein is differentially abundant if its change in abundance across conditions is found
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with statistical tests for differential abundance.
Distinct protein accessions are counted across all files submitted in the "Statistical Analysis
of Quantified Analytes" category having a "Protein" column in this dataset.
"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE.
It has been imported to MassIVE for reanalysis purposes, so its spectra data here may
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