MassIVE MSV000098187

Partial Public

Structural variability of apolipoprotein A-I amyloid fibrils across organs, mutations, and clinical presentations, revealed by cryo-EM

Subscribe Comment Convert Spectra Reanalyze Spectra Add Reanalysis

Description

All these samples are fibrils isolated from patient tissues of different organs. Intact Mass Analysis: ID 1175196 - ApoAI-R173P - Heart ID 1175197 - ApoAI-R173P - Kidney ID 1175198 - ApoAI-R173P - Liver ID 1175199 - ApoAI-R173P - Spleen ID 1175200 - ApoAI-G26R - Kidney ID 1175201 - ApoAI-G26R - Liver ID 1175202 - ApoAI-G26R - Spleen ID 1175203 - ApoAI-L90P - Heart Trypsin digestion, LC-MS/MS: ID 1151139 - ApoAI-R173P - Heart, Contain both Wild type and mutant Arg173Pro ID 1175177 - ApoAI-R173P - Kidney, Contain both Wild type and mutant Arg173Pro ID 1175178 - ApoAI-R173P - Liver, Contain both Wild type and mutant Arg173Pro ID 1175179 - ApoAI-R173P - Spleen, Contain both Wild type and mutant Arg173Pro ID 1175180 - ApoAI-G26R - Kidney, Contain both Wild type and mutant Gly26Arg ID 1175181 - ApoAI-G26R - Liver, Contain both Wild type and mutant Gly26Arg ID 1175182 - ApoAI-G26R - Spleen, Contain both Wild type and mutant Gly26Arg ID 1175183 - ApoAI-L90P - Heart, Contain both Wild type and mutant Leu90Pro GluC digestion, LC-MS/MS ID 1160261 - ApoAI-R173P - Heart, Contain both Wild type and mutant Arg173Pro [doi:10.25345/C5SF2MQ6N] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: amyloid ; systemic amyloidosis ; G26R ; L90P ; R173P ; helical reconstruction ; cryo-EM ; Apolipoprotein A-1 ; DatasetType:Proteomics

Contact

Principal Investigators:
(in alphabetical order) 		Lorena Saelices Gomez, UT Southwestern Medical Center, United States
Submitting User: alemoff
Number of Files:
Total Size:
Spectra:
Subscribers:
 
Owner Reanalyses
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Dataset Files
 
FTP Download Link (click to copy):

Species

Instrument

Modifications

- Dataset Reanalyses

+ Dataset History

Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.