MassIVE MSV000086394

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GNPS - Metabolic output from Wheatgrass Mixed Microbial Culture

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Description

This dataset contains .mzml and .d files from a time-course study to assess the metabolic stability of control and wheatgrass-associated mixed microbial cultures (MMCs). The metadata file is also included. Instrument settings: Agilent Eclipse C18 column, 1.8 um, 2.1 x 50 mm. Method: Solvent A, water with 0.1% formic acid, solvent B, acetonitrile with 0.1% formic acid; gradient of 2-98% acetonitrile in 18 min; flow rate of 0.4 mL/min; column temperature at 30C. MS/MS settings: MS scan range 100-1200 m/z, where two most abundant precursors selected for MS/MS (range 50-800); collision energy of 50 eV (positive mode). [doi:10.25345/C5HZ16] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: mixed microbial culture metabolic output ; stability ; MMC

Contact

Principal Investigators:
(in alphabetical order) 		Akira Kawamura, Hunter College, USA
Submitting User: adomzalski

Publications

Domzalski A, Perez SD, Yoo B, Velasquez A, Vigo V, Pasolli HA, Oldham AL, Henderson DP, Kawamura A.
Uncovering potential interspecies signaling factors in plant-derived mixed microbial culture.
Bioorg Med Chem. 2021 Jul 15;42:116254. doi: 10.1016/j.bmc.2021.116254. Epub 2021 Jun 4.

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Identification Results
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Quantification Results
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Species

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Modifications

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GNPS content goes here (MSV000086394 [task=dfa7335145df495182bf5ad968e26ae3])
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Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.