MassIVE MSV000094933

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An algicidal bacterium shapes the microbiome during outdoor diatom cultivation collapse

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Description

Proteomic measurements for samples from 5 outdoor algal ponds over a time series; ponds were sampled during the fall of 2015. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline against FASTA files compiled from ponds sequenced metagenomes and proteomes of dominating algae Nannochloropsis salina and Phaeodactylum tricornutum. [doi:10.25345/C5VM43819] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: diatom ; microbiome ; algal-bacterial interactions

Contact

Principal Investigators:
(in alphabetical order) 		Ty Samo, Lawrence Livermore National Laboratory, United States
Submitting User: alchemistmatt

Publications

Gilbert NE, Kimbrel JA, Samo TJ, Siccardi AJ, Stuart RK, Mayali X.
A bloom of a single bacterium shapes the microbiome during outdoor diatom cultivation collapse.
mSystems. Epub 2025 May 14.

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