MassIVE.quant

	Title	Submission Type	Keywords	Quantitative Analysis	Conditions	Biological Replicates	Technical Replicates	Quantified Proteins	Differentially Abundant Proteins	Principal Investigator	Species	Instrument	# Quant Reanalyses	Reanalysis Containers	Upload Date	PTMs
Submitted MassIVE Datasets Hits 1 ~ 30 out of 88 Go to Select columns
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1	PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia MSV000096019 \| PXD056483	Partial	+PU.1 Acute Lymphoblastic Leukemia Glucocorticoids Resistance	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Duohui Jing	Homo sapiens (NCBITaxon:9606)	timsTOF HT	0	N/A	Oct. 3, 2024, 7:47 AM	UNIMOD:35 - "Oxidation or Hydroxylation."
2	IRF4 mediates nonenzymatic dependency on IRE1 in Multiple 1 Myeloma cells MSV000095907	Partial	IRE1 nonenzymatic activity, IRF4, IRF4 activity, E2F1, cell cycle regulation	+Quantification Results Differential Abundance Results Study Design	0	0	0	33,365	9,412	Avi Ashkenazi	Homo sapiens (NCBITaxon:9606)	Orbitrap Eclipse	0	N/A	Sep. 19, 2024, 1:12 PM	Fixed mod: C (+57.0215), K (+304.2071), peptide N-term (+304.2071). Variable mod: M (+15.994), Y(+304.2071), STY (+79.9663)
3	ATF6 promotes colorectal cancer growth and stemness by regulating the Wnt pathway MSV000095581	Partial	ATF6, IRE1, unfolded protein response, Wnt signaling pathway	+Quantification Results Differential Abundance Results Study Design	0	0	0	8,962	6,393	Avi Ashkenazi	Homo sapiens (NCBITaxon:9606)	Orbitrap Eclipse	0	N/A	Aug. 12, 2024, 12:57 PM	+Fixed Mod: C (+57.0215), K (+304.2071), peptide N-term (+304.2071) Varibale Mod: M (+15.994), Y (+304.2071)
4	IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport MSV000095101 \| PXD053277	Partial	endoplasmic reticulum, COPII, anterograde transport, microcephaly, diabetes, axon pathfinding, cortical development	+Quantification Results Differential Abundance Results Study Design	2	4	1	0	0	Christoph Kaether	Homo sapiens (NCBITaxon:9606)	Orbitrap Exploris 480	0	N/A	Jun. 21, 2024, 1:05 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:1 - "Acetylation." UNIMOD:4 - "Iodoacetamide derivative."
5	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095080 \| PXD053239	Partial	+Ribosome profiling killifish aging brain	+Quantification Results Differential Abundance Results Study Design	10	1	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 19, 2024, 4:14 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:4 - "Iodoacetamide derivative."
6	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095079 \| PXD053235	Partial	+PRM Killifish Brain Aging Nothobranchius	+Quantification Results Differential Abundance Results Study Design	3	8	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 19, 2024, 3:56 AM	UNIMOD:35 - "Oxidation or Hydroxylation."
7	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095078 \| PXD053232	Partial	+Bortezomib Killifish Aging brain proteasome inhibition	+Quantification Results Differential Abundance Results Study Design	2	6	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 19, 2024, 3:24 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:4 - "Iodoacetamide derivative."
8	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095074 \| PXD053229	Partial	+Killifish Muscle Aging Nothobranchius furzeri	+Quantification Results Differential Abundance Results Study Design	3	8	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 19, 2024, 1:39 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:4 - "Iodoacetamide derivative."
9	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095063 \| PXD053202	Partial	+Optic Tectum Killifish Aging Brain Nothobranchius furzeri	+Quantification Results Differential Abundance Results Study Design	3	8	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 18, 2024, 7:05 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:4 - "Iodoacetamide derivative."
10	Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain MSV000095062 \| PXD053201	Partial	+killifish Liver Aging Nothobranchius furzeri	+Quantification Results Differential Abundance Results Study Design	3	8	1	0	0	Alessandro Ori	Nothobranchius furzeri (NCBITaxon:105023)	Orbitrap Exploris 480	0	N/A	Jun. 18, 2024, 5:41 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:6 - "Iodoacetic acid derivative."
11	leA nonenzymatic dependency on inositol-requiring enzyme 1 controls cancer cell cycle progression and tumor growth MSV000093902	Partial	+DIA IRE1 XBP1	+Quantification Results Differential Abundance Results Study Design	4	4	3	5,610	269	Avi Ashkenazi	Homo sapiens (NCBITaxon:9606)	Orbitrap Exploris 480	0	N/A	Jan. 22, 2024, 11:56 AM	MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
12	Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation MSV000093150 \| PXD046229	Partial	+TMT iPSC NGN2 DDA	+Quantification Results Differential Abundance Results Study Design	6	18	1	10,057	9,086	Claire G. Jeong	Homo sapiens (NCBITaxon:9606)	Orbitrap Eclipse	0	N/A	Oct. 18, 2023, 11:29 PM	MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
13	CPTAC CCRCC Discovery Study - DIA Proteome MSV000093041	Partial	CPTAC	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Hui Zhang	Homo sapiens (NCBITaxon:9606)	Orbitrap Fusion Lumos	0	RMSV000000696	Oct. 4, 2023, 4:00 PM	+UNIMOD:4 - "Iodoacetamide derivative." UNIMOD:737 - "Sixplex Tandem Mass Tag." UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:1 - "Acetylation." UNIMOD:21 - "Phosphorylation."
14	Chronic UCN2 Treatment Desensitizes CRHR2 and Improves Insulin Sensitivity MSV000092094 \| PXD042709	Complete	UCN2, CRHR2, phosphoproteomics, Acute, Gastrocnemius, skeletal muscle	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Zhidan Wu	Mus musculus (NCBITaxon:10090)	Orbitrap Fusion Lumos	0	N/A	Jun. 4, 2023, 5:29 AM	UNIMOD:21 - "Phosphorylation."
15	DOCK8 is a Novel Regulator of Lysosome Mediated Pancreatic Cancer Invasion MSV000091036 \| PXD039351	Partial	Metastasis, invasion, pancreatic cancer, lysosome, matrix degradation	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Gina L Razidlo	Mus musculus (NCBITaxon:10090)	Q Exactive	0	N/A	Jan. 10, 2023, 9:25 AM	+UNIMOD:4 - "Iodoacetamide derivative." UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:1 - "Acetylation."
16	TEAD is required for DNA repair independent of its transcriptional function MSV000090760 \| PXD038226	Partial	+TEAD GeLS-MS Spectrum counting	+Quantification Results Differential Abundance Results Study Design	4	12	1	0	0	Jennie Lill	Homo sapiens (NCBITaxon:9606)	LTQ Orbitrap Elite	0	N/A	Nov. 21, 2022, 3:05 PM	+MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group." MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group." MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')."
17	Volpatti_Myopathy_P124_Lumos_VS8 MSV000089872 \| PXD035277	Partial	+X-linked myotubular myopathy Mtm1 VPA	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Karen Colwill	Mus musculus (NCBITaxon:10090)	Orbitrap Fusion Lumos	0	N/A	Jul. 12, 2022, 12:00 PM	+MOD:00684 - "A protein modification that effectively converts an L-asparagine residue to L-aspartic acid." MOD:00685 - "A protein modification that effectively converts an L-glutamine residue to L-glutamic acid." MOD:00719 - "A protein modification that oxygenates an L-methionine residue to one of the diastereomeric L-methionine sulfoxide residues." UNIMOD:893 - "Carbamidomethylated DTT modification of cysteine."
18	Sarikaya_HistoryMyopathy_P124_Lumos MSV000089841 \| PXD035161	Partial	+X-linked myotubular myopathy MTM1 Subcellular fractionation	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Karen Colwill	Mus musculus (NCBITaxon:10090)	Orbitrap Fusion Lumos	0	N/A	Jul. 7, 2022, 9:56 AM	+MOD:00684 - "A protein modification that effectively converts an L-asparagine residue to L-aspartic acid." MOD:00685 - "A protein modification that effectively converts an L-glutamine residue to L-glutamic acid." MOD:00719 - "A protein modification that oxygenates an L-methionine residue to one of the diastereomeric L-methionine sulfoxide residues." UNIMOD:1 - "Acetylation." UNIMOD:737 - "Sixplex Tandem Mass Tag." UNIMOD:893 - "Carbamidomethylated DTT modification of cysteine."
19	Mablango_ClpP_HYTANE_P124_Lumos MSV000089642	Partial	+ClpP Imipridones cancer HYTANE	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	Anne-Claude Gingras	Homo sapiens (NCBITaxon:9606)	Orbitrap Fusion Lumos	0	N/A	Jun. 13, 2022, 11:16 AM	+UNIMOD:893 - "Carbamidomethylated DTT modification of cysteine." MOD:00719 - "A protein modification that oxygenates an L-methionine residue to one of the diastereomeric L-methionine sulfoxide residues." UNIMOD:24 - "Acrylamide adduct." UNIMOD:1 - "Acetylation." UNIMOD:27 - "Pyro-glu from E." UNIMOD:28 - "Pyro-glu from Q." UNIMOD:36 - "Di-Methylation." UNIMOD:199 - "DiMethyl-CHD2." UNIMOD:330 - "Dimethylated arginine."
20	Repurposing E3 ubiquitin ligases as cell surface protein degraders using Proteolysis Targeting Antibodies MSV000089542	Partial	+TMT Global proteome profiling ZNRF3 E3 ubiquitin ligases	+Quantification Results Differential Abundance Results Study Design	0	0	0	8,173	3,765	Felipe de Sousa e Melo	Homo sapiens (NCBITaxon:9606)	Orbitrap Eclipse	0	N/A	May. 25, 2022, 5:54 AM	MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
21	Spike-in benchmark study : Ubiquitination, Label-free experiments MSV000088971	Partial	+quantitative mass spectrometry benchmark Spike-In Ubiquitination MSstatsPTM	+Quantification Results Differential Abundance Results Study Design	4	8	2	16,866	7,861	+Olga Vitek Meena Choi	+Homo sapiens (NCBITaxon:9606) Escherichia coli (NCBITaxon:562)	Orbitrap Fusion Lumos	1	RMSV000000669	Mar. 2, 2022, 7:52 AM	+UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:121 - "Ubiquitinylation residue."
22	Reanalysis of Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism in Proteome Discoverer 2.5 MSV000088522	Partial	Thermal Proteome Profiling, Zebrafish, thermal shift assays	+Quantification Results Differential Abundance Results Study Design	20	4	1	0	0	Simone Lemeer	Danio rerio (NCBITaxon:7955)	Q Exactive HF-X	0	+RMSV000000672 RMSV000000695	Dec. 6, 2021, 7:54 AM	+[M] [15.99492] Oxidation UNIMOD:35 [N-term] [42.01057] Acetylation UNIMOD: 1 UNIMOD:765 - "Removal of initiator methionine from protein N-terminus." UNIMOD:766 - "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus." [C] [57.021464] Carbamidomethyl UNIMOD: 4 [K] [229.16293] TMT 6-plex UNIMOD: 737 [Peptide N-term] [229.16293] TMT6plex UNIMOD: 737
23	An ultrasensitive method for analysis of viral spike N-glycoforms MSV000087414 \| PXD025990	Partial	+Proteinase K N-glycan heterogeneity HIV BG505 Env viral spike endoglycosidase	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	John R. Yates III	+Homo sapiens (NCBITaxon:9606) BG505 SOSIP.664 MD39 BG505 SOSIP.664	+Q Exactive HF-X timsTOF Pro	0	N/A	May. 12, 2021, 8:28 PM	+UNIMOD:43 - "N-Acetylhexosamine." UNIMOD:170 - "Glycosylated asparagine 18O labeling." UNIMOD:35 - "Oxidation or Hydroxylation." MOD:00040 - "A protein modification that effectively converts an L-glutamine residue to 2-pyrrolidone-5-carboxylic acid."
24	Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injury MSV000086623 \| PXD023255	Partial	+DIA Thermo Fusion Lumos HRM rat plasma RIP1 kinase ischemic brain injury	+Quantification Results Differential Abundance Results Study Design	17	42	5	279	231	Baris Bingol	Sprague Dawley	Orbitrap Fusion Lumos	0	N/A	Dec. 21, 2020, 9:05 AM	MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
25	A Quantitative Proteome Map of the Human Body MSV000086387 \| PXD016999	Partial	quantitative proteomics of 32 normal human tissues	+Quantification Results Differential Abundance Results Study Design	33	56	2	9,154	8,913	mike snyder	Homo sapiens (NCBITaxon:9606)	Orbitrap Fusion	1	+RMSV000000366 RMSV000000635	Oct. 30, 2020, 2:18 AM	+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group." MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group." MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group." MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
26	Urine proteomics profiling of the COVID-19 MSV000085516 \| PXD018970	Partial	+Urine proteomics COVID-19 SARS-CoV-2 CoronaMassKB	+Quantification Results Differential Abundance Results Study Design	4	40	3	2,232	902	Ping Xu	Homo sapiens (NCBITaxon:9606)	Orbitrap Fusion Lumos	1	RMSV000000343	May. 30, 2020, 12:44 PM	MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset
27	Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus MSV000085510 \| PXD018594	Complete	+coronavirus SARS-CoV-2 COVID-19 virus kinetics viral particle host response severe acute respiratory syndrome vaccine CoronaMassKB	+Quantification Results Differential Abundance Results Study Design	2	2	10	1,622	1,008	Jean Armengaud	+Betacoronavirus sp. (NCBITaxon:1928434) Chlorocebus aethiops aethiops (NCBITaxon:101841)	MS:1002523	1	RMSV000000340	May. 29, 2020, 4:50 PM	+UNIMOD:7 - "Deamidation." UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:4 - "Iodoacetamide derivative."
28	GNPS - Proteomic and Metabolomic Characterization of COVID-19 Patient Sera MSV000085507 \| PXD019221	Partial	+COVID-19 Proteomics Metabolomics Severity CoronaMassKB MassIVE.quant reviewed - Platinum	+Quantification Results Differential Abundance Results Study Design	8	91	26	1,417	692	Tiannan Guo	+Homo sapiens Severe acute respiratory syndrome coronavirus 2	Q Exactive HF	4	+RMSV000000327 RMSV000000331	May. 29, 2020, 3:11 PM	+UNIMOD:4 - "Iodoacetamide derivative." UNIMOD:2016 - "TMTpro 16plex Tandem Mass Tag" UNIMOD:35 - "Oxidation or Hydroxylation." UNIMOD:1 - "Acetylation."
29	Inhibition of growth factor signaling prevents SARS-CoV-2 replication MSV000085494 \| PXD018357	Partial	+TMT SARS-CoV-2 COVID-19 Infection Phospho CoronaMassKB	+Quantification Results Differential Abundance Results Study Design	2	6	5	7,597	5,787	Christian M�nch	Homo sapiens (NCBITaxon:9606)	Orbitrap Fusion Lumos	4	RMSV000000341	May. 28, 2020, 7:24 PM	+MOD:01720 - "A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group." MOD:00696 - "A protein modification that effectively replaces a hydrogen atom with a phosphono group (H2PO3 or 'phosphate')." MOD:00425 - "A protein modification that effectively replaces one hydrogen atom with a hydroxyl group." MOD:00394 - "A protein modification that effectively replaces a hydrogen atom with an acetyl group." MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."
30	The effect of pathogen inactivation on cryoprecipitate: A functional and quantitative evaluation MSV000085374 \| PXD018986	Partial	+plasma apheresis cryoprecipiate microflow data-independent acquisition	+Quantification Results Differential Abundance Results Study Design	0	0	0	0	0	+Matthew W. Foster Reed Kamyszek	Homo sapiens (NCBITaxon:9606)	Q Exactive HF-X	0	N/A	May. 4, 2020, 9:07 PM	MOD:00397 - "A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group."

MassIVE.quant Datasets