MassIVE RMSV000000617

RPXD032658

MassIVE Knowledge Base (MassIVE-KB) dataset reanalysis

Description

Reanalysis containers define spaces for sharing reanalyses of a specific set of datasets. To facilitate comparisons and consistency across multiple reanalyses, all related reanalysis results of the same set of datasets should be attached to the same container. Distinct reanalyses are assigned unique RMSV000000617.y and/or RPXD032658.y identifiers that can be used to link directly to the corresponding results attached to the container (see Reanalyses table below).

Keywords: N/A

Reanalyzed Datasets

  • MSV000088431 : Mapping the spatial proteome of metastatic cells in colorectal cancer
Number of Files:
Total Size:
 
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Container Files
 
FTP Download Link (click to copy):

Species

Instrument

Modifications

- Active Reanalyses

Number of distinct conditions across all reanalyses in this container.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this container's reanalyses.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all reanalyses in this container.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this container's reanalyses.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all reanalyses in this container.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all reanalyses in this container.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all reanalyses in this container.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all reanalyses in this container.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all reanalyses in this container.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all reanalyses in this container.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this container's active reanalyses.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all reanalyses in this container.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this container's active reanalyses.

"N/A" means no results of this type were submitted.