MassIVE MSV000087123

Partial Public

GNPS Metabolomics of Amaranthus tuberculatus (whole-plant assay)

Description

Resistance to a non-selective HPPD-inhibiting herbicide syncarpic acid-3 (SA3) in populations of waterhemp (Amaranthus tuberculatus) (whole-plant assay) revealed using untargeted metabolomics via LC-MS. [doi:10.25345/C5J807] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Triketones ; 4-HPPD inhibiting herbicide ; waterhemp ; syncarpic acid ; untargeted metabolomics ; whole-plant assay

Contact

Principal Investigators:
(in alphabetical order)
Dean E. Riechers, Department of Crop Sciences, University of Illinois at Urbana-Champaign, Illinois, United States
Jeanaflor Crystal T. Concepcion, Department of Crop Sciences, University of Illinois at Urbana-Champaign, Illinois, United States
Shiv S. Kaundun, Syngenta Ltd., Jealott?s Hill International Research Centre, Bracknell, Berkshire, United Kingdom
Submitting User: jcc13

Publications

Concepcion JCT, Kaundun SS, Morris JA, Hutchings SJ, Strom SA, Lygin AV, Riechers DE.
Resistance to a nonselective 4-hydroxyphenylpyruvate dioxygenase-inhibiting herbicide via novel reduction-dehydration-glutathione conjugation in Amaranthus tuberculatus.
New Phytol. 2021 Dec;232(5):2089-2105. Epub 2021 Sep 29.

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GNPS content goes here (MSV000087123 [task=3f17b77b613d458495f94cb6c842ada4])
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Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

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Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.