MassIVE MSV000084841

Partial Public

Proteome of Yki-driven intestinal stem cell tumors in Drosophila midgut

Description

The experiment was undertaken to characterize Yki-driven intestinal stem cell tumor proteome from Drosophila adult midguts, and to identify changes in the ISC tumor proteome in flies fed on TONDU peptide, using LC MS/MS approach. esgts>UAS-yki3SA flies on day 1, day 7 of tumor induction; TONDU-peptide fed flies on day 7; and esgts>UAS-yki3SA UAS-vgTONDU on day 7 were used for proteome analysis. Briefly, gut lysate from 20 female flies was obtained in extraction buffer (6M GnHCl in 50mM Tris-Cl pH 7.4, 65 mM DTT) with 50 mM sodium acetate and protease inhibitors (1X protease inhibitor cocktail with 0.2 mM PMSF). 5 microgram of the protein samples were reduced with 5 mM TCEP, further alkylated with 50 mM iodoacetamide, and digested with Trypsin (1:50, Trypsin/lysate ratio) for 16 hours at 37 degree Celsius. Digests were cleaned using a C18 silica cartridge to remove the salt and dried using a speed vac. The dried pellet was resuspended in 5% acetonitrile, 0.1% formic acid (Buffer A). The experiment was performed using an EASY-nLC 1000 system (Thermo Fisher Scientific) coupled to a Thermo Fisher-Orbitrap Fusion mass spectrometer equipped with a nanoelectrospray ion source. 1.0 microgram of the peptide mixture was resolved using a 25 cm Thermo Easy-spray PepMap C18 column. The peptides were loaded with Buffer A and eluted with a 0 to 40% gradient of Buffer B (95% acetonitrile, 0.1% formic acid) at a flow rate of 300 nl/min for 60 min. MS data was acquired using a data-dependent top20 method dynamically choosing the most abundant precursor ions from the survey scan. [doi:10.25345/C5PT1C] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Drosophila, Yki, ISC tumors, TONDU peptide,

Contact

Principal Investigators:
(in alphabetical order)
Anjali Bajpai, Indian Institute of Technology Kanpur, India
Submitting User: anjalibajpai

Publications

Bajpai A, Ahmad QT, Tang HW, Manzar N, Singh V, Thakur A, Ateeq B, Perrimon N, Sinha P.
A Drosophila model of oral peptide therapeutics for adult Intestinal Stem Cell tumors.
Dis Model Mech. Epub 2020 Jun 15.

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