MassIVE MSV000083125

Partial Public

BioID MS data for Gfi1b regulates the level of Wnt Beta-catenin signaling in hematopoietic stem cells and megakaryocytes, Nat Com 2018

Subscribe Comment Reanalyze Spectra Add Reanalysis

Description

4274_OF_20170925_MOR_04: BirA*-Flag (control) replicate 1 4277_OF_20170925_MOR_01: GFI1B-BirA*-Flag replicate 1 4279_OF_20170925_MOR_03_new: BirA*-Flag (control) replicate 2 4286_OF_20170925_MOR_02_new: GFI1B-BirA*-Flag replicate 2 OF_20171106_MOR_01_new: Betacatenin-BirA*-Flag transfected with Empty Vector, replicate 1 OF_20171106_MOR_02_new: Betacatenin-BirA*-Flag transfected with Empty Vector, replicate 2 OF_20171106_MOR_03_new: Betacatenin-BirA*-Flag transfected with GFI1B, replicate 1 OF_20171106_MOR_04_new: Betacatenin-BirA*-Flag transfected with GFI1B, replicate 2 OF_20171107_MOR_01_new: Betacatenin-BirA*-Flag transfected with GFI1B DeltaSnag, replicate 1 OF_20171107_MOR_02_new: Betacatenin-BirA*-Flag transfected with GFI1B DeltaSnag, replicate 2 OF_20171107_MOR_03_new: Betacatenin-BirA*-Flag transfected with GFI1B DeltaWRD, replicate 1 OF_20171107_MOR_04_2_new: Betacatenin-BirA*-Flag transfected with GFI1B DeltaWRD, replicate 2 VL_20120305_MOR_01_new: GFI1B Flag AP-MS data VL_20120305_MOR_02_new: GFI1B Flag AP-MS data VL_20120305_MOR_03_new: GFI1B Flag AP-MS data VL_20120305_MOR_04_new: GFI1B Flag AP-MS data VL_20120305_MOR_05_new: GFI1B Flag AP-MS data VL_20120305_MOR_06_new: GFI1B Flag AP-MS data VL_20120305_MOR_07_new: GFI1B Flag AP-MS data VL_20120305_MOR_08_new: GFI1B Flag AP-MS data [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Gfi1b ; Wnt signaling ; Beta-catenin ; hematopoietic stem cells ; megakaryocytes ; integrins

Contact

Principal Investigators:
(in alphabetical order) 		Tarik Moroy, IRCM, Canada
Submitting User: halbagci
Number of Files:
Total Size:
Spectra:
Subscribers:
 
Owner Reanalyses
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Dataset Files
 
FTP Download Link (click to copy):

Species

Instrument

Modifications

- Dataset Reanalyses

+ Dataset History

Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.