Global metaproteomic analyses of microbial biomass from the upper water column of the Central Pacific Ocean. This dataset was used as a discovery dataset to identify peptide biomarkers for cyanobacterial populations for use in targeted metaproteomic calibrated multiple reaction monitoring (MRM) analyses published in in Saito et al., 2014 and 2015. Saito, M. A., McIlvin, M. R., Moran, D. M., Goepfert, T. J., DiTullio, G. R., Post, A. F., and Lamborg, C. H.: Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers, Science, 345, 1173-1177, 2014. Saito, M. A., Dorsk, A., Post, A. F., McIlvin, M., Rappé, M. S., DiTullio, G., and Moran, D.: Needles in the Blue Sea: Sub?Species Specificity in Targeted Protein Biomarker Analyses Within the Vast Oceanic Microbial Metaproteome, PROTEOMICS, 15, 3521-3531, 2015.
[doi:10.25345/C5086J]
[dataset license: CC0 1.0 Universal (CC0 1.0)]
Keywords: Metaproteomics proteomics oceanography oceanic proteome
Principal Investigators: (in alphabetical order) |
Makoto Saito, Marine Chemistry Geochemistry, Woods Hole Oceanographic Institution, US, N/A |
Submitting User: | ccms |
Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA.
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
J Proteome Res. 2019 Apr 5;18(4):1461-1476. Epub 2019 Mar 12.
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