MassIVE MSV000091773

Partial Public

GNPS - Alpine Willows (Salix, Salicaceae)

Description

Contrasting levels of beta-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species Martin Volf*, Jing Vir Leong, Paola de Lima Ferreira, Tereza Volfova, Petr Kozel, Pavel Matos-Maravi, Elvira Horandl, Natascha D. Wagner, Niko Luntamo, Juha-Pekka Salminen, Simon T. Segar, Brian E. Sedio *Corresponding author: Martin Volf, volf@entu.cas.cz, tel. +420 387775038, Biology Centre, Czech Academy of Sciences, Institute of Entomology, Branisovska 31, 37005 Ceske Budejovice, Czech Republic Untargeted metabolomics data was generated for the above publication for 29 species of willows in the Czech Republic and Austria, encompassing an elevation gradient spanning >2500 m (from 175 to 2620 m asl). Extraction and instrumental methods are reported in Volf et al. 2023 Ecology Letters and Sedio et al. 2021 Frontiers in Ecology and Evolution, https://doi.org/10.3389/fevo.2021.679638 [doi:10.25345/C59Z90N8R] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: willow ; Salix ; Europe ; Alps ; Alpine

Contact

Principal Investigators:
(in alphabetical order)
Brian E. Sedio, University of Texas at Austin, USA
Submitting User: bsedio
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Identification Results
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GNPS content goes here (MSV000091773 [task=de3b3647b4e84ff38892377025fc48ee])
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Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

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Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.