MassIVE MSV000096804

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Chesneau_et_al_MetaFlowTrain_Exometabolites

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Description

Bacterial and fungal exometabolites were harvested from the MetaFlowTrain system, where bacteria and fungi were cultivated in various peat washes. Two milliliters of exometabolites were collected from the MetaFlowTrain output at two distinct time points: 24 hours and 62 hours. These exometabolites were subsequently extracted (for detailed methods, refer to the associated publication). Data Overview: 221208 Folders: Data were used to create Figures 3 and 4 and were acquired in Full-MS/ddMS2 (Top10). 230530 Folders: Data contributed to Figure 2 and were acquired in Full-MS. File Naming Convention: Sample number_Microbial inoculum in the first chamber_Microbial inoculum in the second chamber_Peat wash used For example, 01_F_B_Peat1 refers to sample 1, fungi in the first chamber, bacteria in the second chamber, and peat wash 1. Abbreviations: F: Fungi, B: Bacteria, X: Mock Additional Files: TraceFinder Raw Tables These tables are provided for the four files (221208_Guillaume_Chambers_AA, 221208_Guillaume_Chambers_TCA&Gly, 230530_Guillaume_Chambers, 230530_Guillaume_Chambers_AA) and include key parameters for all samples, pools, and standards: - Retention Time (Actual RT) - Accurate Mass Measurements (m/z Apex / m/z Delta) - Ion Abundance (Area) - Ion Height (Height) Summary Table (Level 1 identification): A summary table is also included, detailing targeted retention times for all metabolites and the spectra for the TCA&Gly identification: - RT Sample Average: The average retention time for samples in the set. - RT Sample %RSD: The percentage relative standard deviation (%RSD) of sample retention times, indicating variability. - RT Pool Average: The average retention time for pooled samples. - RT Pool %RSD: The %RSD for pooled samples, showing variability. - RT Std Average: The average retention time for standard samples. - RT Std %RSD: The %RSD for standard retention times. - RT Difference Pool-Std: The difference in retention times between pooled and standard samples. [doi:10.25345/C5V40KB3M] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: Microbial Exometabolites ; DatasetType:Metabolomics

Contact

Principal Investigators:
(in alphabetical order) 		Guillaume Chesneau, Max Planck for Plant Breeding, Germany
Submitting User: sperin
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Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

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Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

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Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

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Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

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This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.