MassIVE MSV000086869

Partial Public

GNPS Colostethus imbricolus - SBCN column

Description

We employed a cyanopropylsilane column Zorbax SB-CN (150 x 3.0 mm x 3.5 um, Agilent technologies, Santa Clara, USA) for optimizing the separation conditions. We use two gradient methods, one of 30 minutes for optimizing TTX retention, and another of 20 minutes shortening the re-equilibration time. For both cases, the mobile phases were A (5 mM formic acid and 5 mM ammonium formate in Milli-Q water) and B (ACN, 5 mM formic acid, 5 mM ammonium formate) at a flow rate of 0.2 mL/min and 45ºC. First gradient elution started to 80%B for 3 min, then decreased to 70%B at 4 min, then to 65%B at 4.5 min, 60%B at 6 min, and maintained for 4 min and thereafter returned back to starting conditions in 15 min and finally 5 min of re-equilibration time was applied. Total run time was 30 min. Second gradient started to 80%B, then decreased to 70%B at 3 min, then to 60%B at 4 min, 55%B at 4.5 min, then increased again to 60%B at 6 min, 70%B at 7 min, and thereafter returned back to starting conditions in 13 min. Total run time was 20 min. MS spectra of both methods were acquired in positive ion mode in the range of 20–400 m/z and a scan rate of 6 scan/min. 10 uL of the TTX 10 ppm solution or from samples of frog extracts were analyzed using an HPLC1260 system coupled to a Q-TOF 6520 (Agilent Technologies, Santa Clara, CA, USA). The Q-TOF mass spectrometer was operated in positive electrospray ionization (ESI) mode in separate runs, employing a full scan mode in the mass range from 20 to 400 m/z and a scan rate of 6.0 scan/s. The mass spectrometer source conditions consisted of gas heater of 350 C, a nebulizer gas flow rate of 13 L/min, a pressure of 45 psi, a capillary voltage of 3500V, fragmentor to 120 V, skimmer voltage of 75 V and octupole RF of 750 V. A constant mass correction was performed during all analysis using an Agilent Standard mix (Agilent Technologies, Santa Clara, USA) with two reference masses: m/z 121.0509 (C5H4N4) and m/z 922.0098 (C18H18O6N3P3F24). [doi:10.25345/C5XR40] [dataset license: CC0 1.0 Universal (CC0 1.0)]

Keywords: TTX ; Dendrobatoidea ; Poison frogs ; Alkaloids

Contact

Principal Investigators:
(in alphabetical order)
Mabel Gonzalez, Uniandes, Colombia
Submitting User: mabel_gonzalez
Number of Files:
Total Size:
Spectra:
Subscribers:
 
Owner Reanalyses
Experimental Design
    Conditions:
    Biological Replicates:
    Technical Replicates:
 
Identification Results
    Proteins (Human, Remapped):
    Proteins (Reported):
    Peptides:
    Variant Peptides:
    PSMs:
 
Quantification Results
    Differential Proteins:
    Quantified Proteins:
 
Browse Dataset Files
 
FTP Download Link (click to copy):

- Dataset Reanalyses


+ Dataset History


GNPS content goes here (MSV000086869 [task=fb356c87e1a34b07a6ce6b14750b9866])
Click here to queue conversion of this dataset's submitted spectrum files to open formats (e.g. mzML). This process may take some time.

When complete, the converted files will be available in the "ccms_peak" subdirectory of the dataset's FTP space (accessible via the "FTP Download" link to the right).
Number of distinct conditions across all analyses (original submission and reanalyses) associated with this dataset.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates across all analyses (original submission and reanalyses) associated with this dataset.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates across all analyses (original submission and reanalyses) associated with this dataset.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed across all files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported across all analyses (original submission and reanalyses) associated with this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified across all analyses (original submission and reanalyses) associated with this dataset.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison across all analyses (original submission and reanalyses) associated with this dataset.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this dataset.

"N/A" means no results of this type were submitted.
This dataset may not contain all raw spectra data as originally deposited in PRIDE. It has been imported to MassIVE for reanalysis purposes, so its spectra data here may consist solely of processed peak lists suitable for reanalysis with most software.