MassIVE Reanalysis - RMSV000000343.1

RPXD025724.1

CoronaMassKB Hackathon: MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000085516 / PXD018970 Urine proteomics profiling of the COVID-19

Description

CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MSStats on Maestro/ MaxQuant reanalysis of MSV000085516 / PXD018970 Urine proteomics profiling of the COVID-19 [doi:10.25345/C5324N]

[See results attachment job for details]

Keywords: Urine proteomics ; COVID-19 ; SARS-CoV-2 ; CoronaMassKB ; ProteoCarta

Reanalyzed Datasets

Number of Files: 13
Total Size: 9.19 GB
 
Experimental Design
    Conditions:
4
    Biological Replicates:
40
    Technical Replicates:
3
 
Identification Results
    Proteins (Human, Remapped):
3,362
    Proteins (Reported):
2,543
    Peptides:
41,198
    Variant Peptides:
101,812
    PSMs:
1,183,419
 
Quantification Results
    Differential Proteins:
902
    Quantified Proteins:
2,232
 
Browse Reanalysis Files Browse Results
Browse Quantification Results Browse Metadata
 
FTP Download Link (click to copy):

Species

Instrument

Modifications
Number of distinct conditions analyzed in this reanalysis.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates in this reanalysis.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates in this reanalysis.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed in files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified in this reanalysis.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison in this reanalysis.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.