MassIVE Reanalysis - RMSV000000340.1

RPXD025722.1

CoronaMassKB Hackathon: MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000085510 / PXD018594 Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus

Description

CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000085510 / PXD018594 Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus [doi:10.25345/C5081N]

[See results attachment job for details]

Keywords: coronavirus ; SARS-CoV-2 ; COVID-19 ; virus ; kinetics ; viral particle ; host response ; severe acute respiratory syndrome ; vaccine ; CoronaMassKB ; ProteoCarta

Reanalyzed Datasets

  • MSV000085510 : Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus
Number of Files: 14
Total Size: 8.98 GB
 
Experimental Design
    Conditions:
2
    Biological Replicates:
2
    Technical Replicates:
10
 
Identification Results
    Proteins (Human, Remapped):
2,137
    Proteins (Reported):
1,882
    Peptides:
14,036
    Variant Peptides:
23,319
    PSMs:
930,919
 
Quantification Results
    Differential Proteins:
1,008
    Quantified Proteins:
1,622
 
Browse Reanalysis Files Browse Results
Browse Quantification Results Browse Metadata
 
FTP Download Link (click to copy):

Species

Instrument

Modifications
Number of distinct conditions analyzed in this reanalysis.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates in this reanalysis.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates in this reanalysis.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed in files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified in this reanalysis.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison in this reanalysis.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.