MassIVE Reanalysis - RMSV000000313.4

CoronaMassKB hackathon: MassIVE/CCMS MSStats on Maestro reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells, Non-phospho files only

Description

CoronaMassKB hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSStats on Maestro reanalysis of MSV000085349 / PXD018581 Proteomics of SARS-CoV and SARS-CoV-2 infected cells [doi:10.25345/C5WF9G]

[See results attachment job for details]

Keywords: COVID19 ; SARS-CoV ; SARS-CoV-2 ; TMT ; CoronaMassKB ; ProteoCarta

Reanalyzed Datasets

  • MSV000085349 : Proteomics of SARS-CoV and SARS-CoV-2 infected cells
Number of Files: 14
Total Size: 8.41 GB
 
Experimental Design
    Conditions:
9
    Biological Replicates:
6
    Technical Replicates:
74
 
Identification Results
    Proteins (Human, Remapped):
9,283
    Proteins (Reported):
8,421
    Peptides:
158,104
    Variant Peptides:
318,931
    PSMs:
540,238
 
Quantification Results
    Differential Proteins:
5,609
    Quantified Proteins:
8,120
 
Browse Reanalysis Files Browse Results
Browse Quantification Results Browse Metadata
 
FTP Download Link (click to copy):

Species

Instrument

Modifications
Number of distinct conditions analyzed in this reanalysis.

Distinct condition labels are counted across all files submitted in the "Metadata" category having a "Condition" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct biological replicates in this reanalysis.

Distinct replicate labels are counted across all files submitted in the "Metadata" category having a "BioReplicate" or "Replicate" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct technical replicates in this reanalysis.

The technical replicate count is defined as the maximum number of times any one distinct combination of condition and biological replicate was analyzed in files submitted in the "Metadata" category. In the case of fractionated experiments, only the first fraction is considered.

"N/A" means no results of this type were submitted.
Originally identified proteins that were automatically remapped by MassIVE to proteins in the SwissProt human reference database.

"N/A" means no results of this type were submitted.
Number of distinct protein accessions reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct unmodified peptide sequences reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct peptide sequences (including modified variants or peptidoforms) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Total number of peptide-spectrum matches (i.e. spectrum identifications) reported in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins quantified in this reanalysis.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.
Number of distinct proteins found to be differentially abundant in at least one comparison in this reanalysis.

A protein is differentially abundant if its change in abundance across conditions is found to be statistically significant with an adjusted p-value <= 0.05 and lists no issues associated with statistical tests for differential abundance.

Distinct protein accessions are counted across all files submitted in the "Statistical Analysis of Quantified Analytes" category having a "Protein" column in this reanalysis.

"N/A" means no results of this type were submitted.